Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | RI061_RS07425 | Genome accession | NZ_CP134070 |
| Coordinates | 1604159..1604485 (-) | Length | 108 a.a. |
| NCBI ID | WP_004918852.1 | Uniprot ID | E4T910 |
| Organism | Riemerella anatipestifer strain SX-1 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1599159..1609485
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RI061_RS07415 (RI061_07415) | - | 1601700..1602014 (+) | 315 | WP_013446767.1 | DUF4286 family protein | - |
| RI061_RS07420 (RI061_07420) | gyrB | 1602140..1604074 (+) | 1935 | WP_004918853.1 | DNA topoisomerase (ATP-hydrolyzing) subunit B | - |
| RI061_RS07425 (RI061_07425) | ssb | 1604159..1604485 (-) | 327 | WP_004918852.1 | single-stranded DNA-binding protein | Machinery gene |
| RI061_RS07430 (RI061_07430) | - | 1604920..1605366 (+) | 447 | WP_004918851.1 | hypothetical protein | - |
| RI061_RS07435 (RI061_07435) | - | 1605514..1605861 (+) | 348 | WP_004918849.1 | hypothetical protein | - |
| RI061_RS07440 (RI061_07440) | - | 1605865..1606941 (-) | 1077 | WP_004918847.1 | tyrosine-type recombinase/integrase | - |
| RI061_RS07445 (RI061_07445) | - | 1606954..1607157 (-) | 204 | WP_013446770.1 | putative signal transducing protein | - |
| RI061_RS07450 (RI061_07450) | - | 1607235..1608416 (+) | 1182 | WP_004918842.1 | acyl-CoA dehydrogenase family protein | - |
| RI061_RS07455 (RI061_07455) | - | 1608446..1608721 (+) | 276 | WP_004918841.1 | hypothetical protein | - |
| RI061_RS07460 (RI061_07460) | - | 1608737..1609444 (+) | 708 | WP_004918839.1 | CoA transferase subunit A | - |
Sequence
Protein
Download Length: 108 a.a. Molecular weight: 12198.96 Da Isoelectric Point: 9.2704
>NTDB_id=802346 RI061_RS07425 WP_004918852.1 1604159..1604485(-) (ssb) [Riemerella anatipestifer strain SX-1]
MKNKVQLIGNVGNTPEIKEVNNTKVAHLSIATNEIYKNAQGERIEQTEWHKVVAWGGLAEIIEKYVTKGKEIAVEGKLTY
RSYDDKEGNKRYVTEIIANDILLLGRAK
MKNKVQLIGNVGNTPEIKEVNNTKVAHLSIATNEIYKNAQGERIEQTEWHKVVAWGGLAEIIEKYVTKGKEIAVEGKLTY
RSYDDKEGNKRYVTEIIANDILLLGRAK
Nucleotide
Download Length: 327 bp
>NTDB_id=802346 RI061_RS07425 WP_004918852.1 1604159..1604485(-) (ssb) [Riemerella anatipestifer strain SX-1]
ATGAAAAACAAGGTTCAACTTATTGGTAATGTGGGTAACACGCCAGAAATTAAAGAGGTTAATAATACTAAAGTAGCTCA
TCTTTCTATAGCTACTAACGAAATTTACAAAAATGCACAAGGAGAGAGGATAGAGCAGACGGAATGGCATAAAGTGGTGG
CTTGGGGAGGACTAGCAGAAATTATAGAAAAGTATGTTACCAAAGGTAAAGAGATAGCTGTTGAGGGGAAGTTAACCTAC
CGAAGTTATGATGATAAAGAAGGAAATAAACGCTATGTTACCGAAATTATAGCTAATGATATCCTGCTTTTGGGAAGAGC
TAAATAA
ATGAAAAACAAGGTTCAACTTATTGGTAATGTGGGTAACACGCCAGAAATTAAAGAGGTTAATAATACTAAAGTAGCTCA
TCTTTCTATAGCTACTAACGAAATTTACAAAAATGCACAAGGAGAGAGGATAGAGCAGACGGAATGGCATAAAGTGGTGG
CTTGGGGAGGACTAGCAGAAATTATAGAAAAGTATGTTACCAAAGGTAAAGAGATAGCTGTTGAGGGGAAGTTAACCTAC
CGAAGTTATGATGATAAAGAAGGAAATAAACGCTATGTTACCGAAATTATAGCTAATGATATCCTGCTTTTGGGAAGAGC
TAAATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
42.478 |
100 |
0.444 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
43.81 |
97.222 |
0.426 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
42.857 |
97.222 |
0.417 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
42.857 |
97.222 |
0.417 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
42.857 |
97.222 |
0.417 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
42.857 |
97.222 |
0.417 |
| ssbB/cilA | Streptococcus mitis SK321 |
42.857 |
97.222 |
0.417 |
| ssb | Glaesserella parasuis strain SC1401 |
42.308 |
96.296 |
0.407 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
40.952 |
97.222 |
0.398 |
| ssbA | Streptococcus mutans UA159 |
39.048 |
97.222 |
0.38 |
| ssb | Neisseria meningitidis MC58 |
39.423 |
96.296 |
0.38 |
| ssb | Neisseria gonorrhoeae MS11 |
39.423 |
96.296 |
0.38 |
| ssbB | Lactococcus lactis subsp. cremoris KW2 |
40.625 |
88.889 |
0.361 |