Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | P3K48_RS02820 | Genome accession | NZ_CP119705 |
| Coordinates | 642015..642452 (+) | Length | 145 a.a. |
| NCBI ID | WP_015728805.1 | Uniprot ID | - |
| Organism | Staphylococcus pseudintermedius strain CUVET16-45 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 637015..647452
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| P3K48_RS02755 (P3K48_02680) | - | 637620..637832 (+) | 213 | WP_063282614.1 | helix-turn-helix transcriptional regulator | - |
| P3K48_RS02760 (P3K48_02685) | - | 637878..638039 (+) | 162 | WP_037543668.1 | hypothetical protein | - |
| P3K48_RS02765 (P3K48_02690) | - | 638043..638306 (-) | 264 | WP_037543667.1 | CRISPR-associated endonuclease Cas2 | - |
| P3K48_RS02770 (P3K48_02695) | - | 638363..638557 (+) | 195 | WP_015728796.1 | hypothetical protein | - |
| P3K48_RS02775 (P3K48_02700) | - | 638663..638830 (+) | 168 | WP_015728797.1 | hypothetical protein | - |
| P3K48_RS02780 (P3K48_02705) | - | 638827..639054 (-) | 228 | WP_060830240.1 | hypothetical protein | - |
| P3K48_RS02785 (P3K48_02710) | - | 639132..639875 (+) | 744 | WP_060830239.1 | BRO family protein | - |
| P3K48_RS02790 (P3K48_02715) | - | 639872..640096 (+) | 225 | WP_015728800.1 | hypothetical protein | - |
| P3K48_RS02795 (P3K48_02720) | - | 640084..640272 (+) | 189 | WP_065354752.1 | hypothetical protein | - |
| P3K48_RS02800 (P3K48_02725) | - | 640342..640602 (+) | 261 | WP_404959948.1 | DUF1108 family protein | - |
| P3K48_RS02805 (P3K48_02730) | - | 640614..640877 (+) | 264 | WP_404959950.1 | hypothetical protein | - |
| P3K48_RS02810 (P3K48_02735) | - | 640861..641346 (+) | 486 | WP_065354750.1 | siphovirus Gp157 family protein | - |
| P3K48_RS02815 (P3K48_02740) | - | 641347..642015 (+) | 669 | WP_015728804.1 | ERF family protein | - |
| P3K48_RS02820 (P3K48_02745) | ssbA | 642015..642452 (+) | 438 | WP_015728805.1 | single-stranded DNA-binding protein | Machinery gene |
| P3K48_RS02825 (P3K48_02750) | - | 642636..643307 (+) | 672 | WP_110164874.1 | putative HNHc nuclease | - |
| P3K48_RS02830 (P3K48_02755) | - | 643300..644013 (+) | 714 | WP_100002827.1 | helix-turn-helix domain-containing protein | - |
| P3K48_RS02835 (P3K48_02760) | - | 644023..644796 (+) | 774 | WP_100002825.1 | ATP-binding protein | - |
| P3K48_RS02840 (P3K48_02765) | - | 644790..644969 (+) | 180 | WP_096533894.1 | hypothetical protein | - |
| P3K48_RS02845 (P3K48_02770) | - | 644970..645404 (+) | 435 | WP_096533893.1 | RusA family crossover junction endodeoxyribonuclease | - |
| P3K48_RS02850 (P3K48_02775) | - | 645388..645606 (+) | 219 | WP_096533892.1 | hypothetical protein | - |
| P3K48_RS02855 (P3K48_02780) | - | 645619..645939 (+) | 321 | WP_096533891.1 | hypothetical protein | - |
| P3K48_RS02860 (P3K48_02785) | - | 645936..646100 (+) | 165 | WP_179292374.1 | hypothetical protein | - |
| P3K48_RS02865 (P3K48_02790) | - | 646100..646552 (+) | 453 | WP_096533890.1 | DUF3310 domain-containing protein | - |
Sequence
Protein
Download Length: 145 a.a. Molecular weight: 16466.13 Da Isoelectric Point: 4.9225
>NTDB_id=800607 P3K48_RS02820 WP_015728805.1 642015..642452(+) (ssbA) [Staphylococcus pseudintermedius strain CUVET16-45]
MINRVVLVGRLTKDPEFRTTQSGVEVATFTLAVNRNYKNKNGEQQADFINCIVFRKQAENVNNYLNKGNLAGVDGRLQSR
SYENQEGRRIFVTEVICDSVQFLESKNNNQSNNQPQQQRGQAPAQDNPFTNANNPIDIDDEDLPF
MINRVVLVGRLTKDPEFRTTQSGVEVATFTLAVNRNYKNKNGEQQADFINCIVFRKQAENVNNYLNKGNLAGVDGRLQSR
SYENQEGRRIFVTEVICDSVQFLESKNNNQSNNQPQQQRGQAPAQDNPFTNANNPIDIDDEDLPF
Nucleotide
Download Length: 438 bp
>NTDB_id=800607 P3K48_RS02820 WP_015728805.1 642015..642452(+) (ssbA) [Staphylococcus pseudintermedius strain CUVET16-45]
ATGATCAACAGAGTCGTATTGGTAGGTCGATTAACAAAAGACCCGGAATTCAGAACGACGCAATCAGGCGTGGAGGTAGC
AACATTTACATTGGCGGTTAACCGCAATTACAAAAATAAAAACGGAGAACAACAAGCAGACTTTATAAACTGTATTGTTT
TTCGTAAGCAAGCAGAAAATGTGAACAACTATCTAAATAAAGGAAATCTAGCTGGCGTTGATGGTCGCTTACAATCACGC
AGTTACGAAAACCAAGAAGGCCGACGTATATTCGTTACAGAAGTGATTTGTGATAGCGTGCAATTTTTAGAGTCTAAAAA
TAACAATCAATCTAACAACCAACCACAACAACAAAGAGGTCAAGCGCCTGCACAAGATAATCCATTCACTAACGCAAATA
ATCCGATTGACATCGACGATGAAGATTTACCCTTTTGA
ATGATCAACAGAGTCGTATTGGTAGGTCGATTAACAAAAGACCCGGAATTCAGAACGACGCAATCAGGCGTGGAGGTAGC
AACATTTACATTGGCGGTTAACCGCAATTACAAAAATAAAAACGGAGAACAACAAGCAGACTTTATAAACTGTATTGTTT
TTCGTAAGCAAGCAGAAAATGTGAACAACTATCTAAATAAAGGAAATCTAGCTGGCGTTGATGGTCGCTTACAATCACGC
AGTTACGAAAACCAAGAAGGCCGACGTATATTCGTTACAGAAGTGATTTGTGATAGCGTGCAATTTTTAGAGTCTAAAAA
TAACAATCAATCTAACAACCAACCACAACAACAAAGAGGTCAAGCGCCTGCACAAGATAATCCATTCACTAACGCAAATA
ATCCGATTGACATCGACGATGAAGATTTACCCTTTTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.814 |
100 |
0.662 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
51.765 |
100 |
0.607 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
56.604 |
73.103 |
0.414 |
| ssbA | Streptococcus mutans UA159 |
38.621 |
100 |
0.386 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
37.931 |
100 |
0.379 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
37.931 |
100 |
0.379 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
37.931 |
100 |
0.379 |
| ssb | Glaesserella parasuis strain SC1401 |
30.337 |
100 |
0.372 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
37.241 |
100 |
0.372 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
37.241 |
100 |
0.372 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
37.241 |
100 |
0.372 |
| ssbB/cilA | Streptococcus mitis SK321 |
37.241 |
100 |
0.372 |
| ssb | Vibrio cholerae strain A1552 |
30.636 |
100 |
0.366 |