Detailed information NTG0795603

Bioinformatically predicted

Overview

• Name: comGC
• Type: Machinery gene
• Locus tag: PYH56_RS06305
• Genome accession: NZ_CP118820
• Coordinates: 1312195..1312512 (+)
• Length: 105 a.a.
• NCBI ID: WP_002446532.1
• Uniprot ID: -
• Organism: Staphylococcus epidermidis strain 7057
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1307195..1317512

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PYH56_RS06275 (PYH56_06275)	-	1307972..1308172 (+)	201	WP_002446537.1	YqgQ family protein	-
PYH56_RS06280 (PYH56_06280)	-	1308172..1309158 (+)	987	WP_020362277.1	ROK family glucokinase	-
PYH56_RS06285 (PYH56_06285)	-	1309158..1309484 (+)	327	WP_001831234.1	MTH1187 family thiamine-binding protein	-
PYH56_RS06290 (PYH56_06290)	-	1309484..1310107 (+)	624	WP_162154472.1	MBL fold metallo-hydrolase	-
PYH56_RS06295 (PYH56_06295)	comGA	1310164..1311138 (+)	975	WP_002446534.1	competence type IV pilus ATPase ComGA	Machinery gene
PYH56_RS06300 (PYH56_06300)	comGB	1311110..1312177 (+)	1068	WP_002496884.1	competence type IV pilus assembly protein ComGB	Machinery gene
PYH56_RS06305 (PYH56_06305)	comGC	1312195..1312512 (+)	318	WP_002446532.1	competence type IV pilus major pilin ComGC	Machinery gene
PYH56_RS06310 (PYH56_06310)	comGD	1312502..1312939 (+)	438	WP_002446531.1	competence type IV pilus minor pilin ComGD	-
PYH56_RS06315 (PYH56_06315)	-	1312926..1313219 (+)	294	WP_020367648.1	hypothetical protein	-
PYH56_RS06320 (PYH56_06320)	-	1313143..1313634 (+)	492	WP_162153693.1	competence type IV pilus minor pilin ComGF	-
PYH56_RS06325 (PYH56_06325)	-	1313799..1314311 (+)	513	WP_002496881.1	shikimate kinase	-
PYH56_RS06330 (PYH56_06330)	gcvT	1314529..1315620 (+)	1092	WP_002501008.1	glycine cleavage system aminomethyltransferase GcvT	-
PYH56_RS06335 (PYH56_06335)	gcvPA	1315640..1316986 (+)	1347	WP_145368256.1	aminomethyl-transferring glycine dehydrogenase subunit GcvPA	-

Sequence

Protein

• Length: 105 a.a.
• Molecular weight: 11491.53 Da
• Isoelectric Point: 9.2160

>NTDB_id=795603 PYH56_RS06305 WP_002446532.1 1312195..1312512(+) (comGC) [Staphylococcus epidermidis strain 7057]
MKTLKLLKQTRAFTLIEMLLVLLIISLLLILIIPNIAKQTSHIQSTGCDAQVKMVNSQIEAYALKHNRNPSNIDDLVSDG
FIKEGQKTCKSGQTISIANGEAVAN

Nucleotide

• Length: 318 bp

>NTDB_id=795603 PYH56_RS06305 WP_002446532.1 1312195..1312512(+) (comGC) [Staphylococcus epidermidis strain 7057]
ATGAAAACATTGAAATTATTGAAACAAACACGAGCATTTACCTTGATAGAAATGCTTTTAGTATTACTAATAATCAGTTT
ATTATTAATACTTATAATTCCAAATATTGCAAAACAAACATCTCATATTCAGTCAACTGGATGTGATGCTCAAGTTAAAA
TGGTAAACAGTCAAATAGAAGCCTACGCTTTAAAACATAACCGCAACCCTTCTAATATTGATGATTTGGTTTCAGATGGT
TTTATAAAAGAAGGACAAAAAACATGTAAATCCGGTCAGACAATAAGTATTGCAAATGGAGAGGCAGTTGCCAATTAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (9-32)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comGC	Staphylococcus aureus MW2	86.275	97.143	0.838
comGC	Staphylococcus aureus N315	86.275	97.143	0.838
comGC/cglC	Streptococcus mitis SK321	43.689	98.095	0.429
comGC/cglC	Streptococcus pneumoniae R6	43.617	89.524	0.39
comGC/cglC	Streptococcus pneumoniae TIGR4	43.617	89.524	0.39
comGC/cglC	Streptococcus pneumoniae Rx1	43.617	89.524	0.39
comGC/cglC	Streptococcus pneumoniae D39	43.617	89.524	0.39
comYC	Streptococcus mutans UA159	47.674	81.905	0.39
comYC	Streptococcus suis isolate S10	47.674	81.905	0.39
comYC	Streptococcus mutans UA140	47.674	81.905	0.39
comYC	Streptococcus gordonii str. Challis substr. CH1	46.512	81.905	0.381
comGC/cglC	Streptococcus mitis NCTC 12261	50	72.381	0.362
comGC	Bacillus subtilis subsp. subtilis str. 168	41.758	86.667	0.362
comGC	Lactococcus lactis subsp. cremoris KW2	46.341	78.095	0.362