Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | PYH56_RS06295 | Genome accession | NZ_CP118820 |
| Coordinates | 1310164..1311138 (+) | Length | 324 a.a. |
| NCBI ID | WP_002446534.1 | Uniprot ID | - |
| Organism | Staphylococcus epidermidis strain 7057 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1305164..1316138
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PYH56_RS06260 (PYH56_06260) | rpmG | 1305646..1305795 (+) | 150 | WP_001830957.1 | 50S ribosomal protein L33 | - |
| PYH56_RS06265 (PYH56_06265) | - | 1305976..1306527 (+) | 552 | WP_002446539.1 | 5-formyltetrahydrofolate cyclo-ligase | - |
| PYH56_RS06270 (PYH56_06270) | - | 1306528..1307988 (+) | 1461 | WP_002457727.1 | rhomboid family intramembrane serine protease | - |
| PYH56_RS06275 (PYH56_06275) | - | 1307972..1308172 (+) | 201 | WP_002446537.1 | YqgQ family protein | - |
| PYH56_RS06280 (PYH56_06280) | - | 1308172..1309158 (+) | 987 | WP_020362277.1 | ROK family glucokinase | - |
| PYH56_RS06285 (PYH56_06285) | - | 1309158..1309484 (+) | 327 | WP_001831234.1 | MTH1187 family thiamine-binding protein | - |
| PYH56_RS06290 (PYH56_06290) | - | 1309484..1310107 (+) | 624 | WP_162154472.1 | MBL fold metallo-hydrolase | - |
| PYH56_RS06295 (PYH56_06295) | comGA | 1310164..1311138 (+) | 975 | WP_002446534.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| PYH56_RS06300 (PYH56_06300) | comGB | 1311110..1312177 (+) | 1068 | WP_002496884.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| PYH56_RS06305 (PYH56_06305) | comGC | 1312195..1312512 (+) | 318 | WP_002446532.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| PYH56_RS06310 (PYH56_06310) | comGD | 1312502..1312939 (+) | 438 | WP_002446531.1 | competence type IV pilus minor pilin ComGD | - |
| PYH56_RS06315 (PYH56_06315) | - | 1312926..1313219 (+) | 294 | WP_020367648.1 | hypothetical protein | - |
| PYH56_RS06320 (PYH56_06320) | - | 1313143..1313634 (+) | 492 | WP_162153693.1 | competence type IV pilus minor pilin ComGF | - |
| PYH56_RS06325 (PYH56_06325) | - | 1313799..1314311 (+) | 513 | WP_002496881.1 | shikimate kinase | - |
| PYH56_RS06330 (PYH56_06330) | gcvT | 1314529..1315620 (+) | 1092 | WP_002501008.1 | glycine cleavage system aminomethyltransferase GcvT | - |
Sequence
Protein
Download Length: 324 a.a. Molecular weight: 37261.33 Da Isoelectric Point: 8.8257
>NTDB_id=795601 PYH56_RS06295 WP_002446534.1 1310164..1311138(+) (comGA) [Staphylococcus epidermidis strain 7057]
MKILFEQIINHAIKQEASDIHFIPCEEHTIIKLRIKDELTIYDTLSFPIYKKLLIYMKFQSGLDVSTQHRAQSGRYSYKM
KRLYYLRISTLPLSLGNESCVIRIVPQYFQTKRESYEFKDFKHFMKKKQGLLLFSGPTGSGKSTLMYQMVLYAHQNLNLN
VISVEDPVEQILNGITQISVNEKAGINYESSFKAILRCDPDVILIGEIRDSTVAKYVIQASLSGHLVLSTMHANDCKGAL
LRLLEMGISVQELCQAINLISNQRLITTTTNTRQLVSELMFQSQINYFFEHNHSLPKNFTKLSTHLNKMSKEGVICEEVV
DKYI
MKILFEQIINHAIKQEASDIHFIPCEEHTIIKLRIKDELTIYDTLSFPIYKKLLIYMKFQSGLDVSTQHRAQSGRYSYKM
KRLYYLRISTLPLSLGNESCVIRIVPQYFQTKRESYEFKDFKHFMKKKQGLLLFSGPTGSGKSTLMYQMVLYAHQNLNLN
VISVEDPVEQILNGITQISVNEKAGINYESSFKAILRCDPDVILIGEIRDSTVAKYVIQASLSGHLVLSTMHANDCKGAL
LRLLEMGISVQELCQAINLISNQRLITTTTNTRQLVSELMFQSQINYFFEHNHSLPKNFTKLSTHLNKMSKEGVICEEVV
DKYI
Nucleotide
Download Length: 975 bp
>NTDB_id=795601 PYH56_RS06295 WP_002446534.1 1310164..1311138(+) (comGA) [Staphylococcus epidermidis strain 7057]
TTGAAAATTTTATTTGAACAGATTATCAATCATGCAATTAAGCAAGAAGCAAGTGACATACACTTTATACCATGTGAGGA
ACACACTATAATTAAGCTAAGAATTAAAGATGAGCTCACAATATATGATACACTTTCATTTCCAATTTATAAAAAATTAC
TTATATACATGAAGTTTCAATCTGGGTTAGATGTATCAACACAGCATAGGGCACAAAGTGGTAGATATAGTTATAAGATG
AAGCGTTTATATTATTTAAGAATCTCTACATTACCGTTATCATTAGGCAATGAAAGTTGTGTAATTCGTATAGTACCTCA
ATACTTCCAAACTAAACGCGAATCATATGAATTTAAAGATTTTAAACACTTCATGAAAAAGAAACAAGGTCTGCTTTTGT
TTAGTGGACCAACTGGCTCTGGCAAAAGTACTTTAATGTACCAAATGGTCCTTTATGCACATCAAAATTTGAATTTAAAT
GTAATATCAGTTGAAGATCCAGTAGAACAAATACTCAATGGAATCACACAAATATCAGTTAATGAAAAGGCAGGTATAAA
TTATGAAAGCTCTTTCAAAGCCATTTTAAGGTGTGATCCAGACGTAATTTTAATTGGTGAAATCAGAGATTCTACCGTAG
CTAAATACGTGATTCAAGCCAGTTTAAGTGGACATTTAGTTTTGTCGACAATGCACGCGAATGATTGCAAGGGAGCATTA
TTACGATTATTAGAAATGGGTATTTCTGTCCAAGAGTTGTGCCAGGCAATCAATTTAATTTCTAATCAAAGATTAATCAC
TACTACTACAAATACTCGTCAACTAGTATCGGAATTAATGTTTCAAAGCCAAATCAATTATTTTTTTGAACATAATCATT
CTTTACCTAAAAATTTCACAAAATTATCTACACATTTAAACAAAATGTCTAAAGAAGGTGTTATATGTGAAGAAGTTGTC
GATAAATACATTTAA
TTGAAAATTTTATTTGAACAGATTATCAATCATGCAATTAAGCAAGAAGCAAGTGACATACACTTTATACCATGTGAGGA
ACACACTATAATTAAGCTAAGAATTAAAGATGAGCTCACAATATATGATACACTTTCATTTCCAATTTATAAAAAATTAC
TTATATACATGAAGTTTCAATCTGGGTTAGATGTATCAACACAGCATAGGGCACAAAGTGGTAGATATAGTTATAAGATG
AAGCGTTTATATTATTTAAGAATCTCTACATTACCGTTATCATTAGGCAATGAAAGTTGTGTAATTCGTATAGTACCTCA
ATACTTCCAAACTAAACGCGAATCATATGAATTTAAAGATTTTAAACACTTCATGAAAAAGAAACAAGGTCTGCTTTTGT
TTAGTGGACCAACTGGCTCTGGCAAAAGTACTTTAATGTACCAAATGGTCCTTTATGCACATCAAAATTTGAATTTAAAT
GTAATATCAGTTGAAGATCCAGTAGAACAAATACTCAATGGAATCACACAAATATCAGTTAATGAAAAGGCAGGTATAAA
TTATGAAAGCTCTTTCAAAGCCATTTTAAGGTGTGATCCAGACGTAATTTTAATTGGTGAAATCAGAGATTCTACCGTAG
CTAAATACGTGATTCAAGCCAGTTTAAGTGGACATTTAGTTTTGTCGACAATGCACGCGAATGATTGCAAGGGAGCATTA
TTACGATTATTAGAAATGGGTATTTCTGTCCAAGAGTTGTGCCAGGCAATCAATTTAATTTCTAATCAAAGATTAATCAC
TACTACTACAAATACTCGTCAACTAGTATCGGAATTAATGTTTCAAAGCCAAATCAATTATTTTTTTGAACATAATCATT
CTTTACCTAAAAATTTCACAAAATTATCTACACATTTAAACAAAATGTCTAAAGAAGGTGTTATATGTGAAGAAGTTGTC
GATAAATACATTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Staphylococcus aureus MW2 |
70.062 |
100 |
0.701 |
| comGA | Staphylococcus aureus N315 |
70.062 |
100 |
0.701 |