Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   PYH56_RS06300 Genome accession   NZ_CP118820
Coordinates   1311110..1312177 (+) Length   355 a.a.
NCBI ID   WP_002496884.1    Uniprot ID   -
Organism   Staphylococcus epidermidis strain 7057     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1306110..1317177
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PYH56_RS06270 (PYH56_06270) - 1306528..1307988 (+) 1461 WP_002457727.1 rhomboid family intramembrane serine protease -
  PYH56_RS06275 (PYH56_06275) - 1307972..1308172 (+) 201 WP_002446537.1 YqgQ family protein -
  PYH56_RS06280 (PYH56_06280) - 1308172..1309158 (+) 987 WP_020362277.1 ROK family glucokinase -
  PYH56_RS06285 (PYH56_06285) - 1309158..1309484 (+) 327 WP_001831234.1 MTH1187 family thiamine-binding protein -
  PYH56_RS06290 (PYH56_06290) - 1309484..1310107 (+) 624 WP_162154472.1 MBL fold metallo-hydrolase -
  PYH56_RS06295 (PYH56_06295) comGA 1310164..1311138 (+) 975 WP_002446534.1 competence type IV pilus ATPase ComGA Machinery gene
  PYH56_RS06300 (PYH56_06300) comGB 1311110..1312177 (+) 1068 WP_002496884.1 competence type IV pilus assembly protein ComGB Machinery gene
  PYH56_RS06305 (PYH56_06305) comGC 1312195..1312512 (+) 318 WP_002446532.1 competence type IV pilus major pilin ComGC Machinery gene
  PYH56_RS06310 (PYH56_06310) comGD 1312502..1312939 (+) 438 WP_002446531.1 competence type IV pilus minor pilin ComGD -
  PYH56_RS06315 (PYH56_06315) - 1312926..1313219 (+) 294 WP_020367648.1 hypothetical protein -
  PYH56_RS06320 (PYH56_06320) - 1313143..1313634 (+) 492 WP_162153693.1 competence type IV pilus minor pilin ComGF -
  PYH56_RS06325 (PYH56_06325) - 1313799..1314311 (+) 513 WP_002496881.1 shikimate kinase -
  PYH56_RS06330 (PYH56_06330) gcvT 1314529..1315620 (+) 1092 WP_002501008.1 glycine cleavage system aminomethyltransferase GcvT -
  PYH56_RS06335 (PYH56_06335) gcvPA 1315640..1316986 (+) 1347 WP_145368256.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 42313.54 Da        Isoelectric Point: 10.0471

>NTDB_id=795602 PYH56_RS06300 WP_002496884.1 1311110..1312177(+) (comGB) [Staphylococcus epidermidis strain 7057]
MKKLSINTFKYKRNKYLTEIQSIDLLQRLHQLLSHGFTLYQSFKFLNSYFKYKERTINEKIIQHLQNGATCYDILKMIGY
PELVLLQIKFAENYGNIDEALVDTVQYMKRNLKAKKRLIKTLQYPVALISIFLFILTILNITVIPQFQQLYETMNVKLST
FQNLVTLIITLLPKLTFIFIFMSGIAFFITYKFYYYLPIERKLKSILKIPMINTYYKIYRTYQLSNQFSLFYRNGTSLQQ
IVQIYRNEQDNEFLKFLGNCLFKEANKGLPLPAILMNLKCFQNDLIKFIEQGEKNGKLDIELKLYSQMLLQQFEEKVLKQ
TKFIQPIIFFILGIFIVSLYLVIMLPMFELMQTIK

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=795602 PYH56_RS06300 WP_002496884.1 1311110..1312177(+) (comGB) [Staphylococcus epidermidis strain 7057]
GTGAAGAAGTTGTCGATAAATACATTTAAATATAAGAGGAATAAATATCTTACTGAAATACAATCAATAGACTTATTACA
GAGATTACATCAGCTTTTAAGTCACGGATTCACTTTATATCAAAGTTTTAAATTTTTAAACTCCTATTTTAAATATAAAG
AACGAACAATAAATGAAAAGATTATCCAACATCTACAAAACGGCGCTACATGTTATGATATTTTAAAAATGATAGGGTAT
CCAGAATTAGTTCTTCTTCAAATAAAATTTGCTGAAAACTACGGTAACATTGATGAGGCTCTCGTTGATACTGTTCAATA
TATGAAAAGAAATTTGAAAGCTAAAAAACGACTCATCAAAACCTTACAATATCCTGTTGCATTAATTTCTATCTTCTTAT
TCATATTAACCATTTTAAATATTACTGTCATACCTCAATTTCAACAACTTTATGAGACTATGAATGTTAAATTATCAACA
TTTCAAAATCTAGTAACTCTTATTATTACCCTTCTTCCCAAGCTAACTTTCATTTTTATCTTTATGAGTGGTATAGCATT
TTTTATCACTTATAAATTTTACTATTATCTACCAATTGAGAGAAAATTAAAATCTATTTTAAAAATCCCAATGATTAATA
CGTATTATAAAATATATAGAACTTATCAACTTTCCAATCAGTTTTCTTTATTTTACAGAAATGGTACAAGTCTTCAACAA
ATTGTCCAAATATATCGTAATGAGCAAGATAACGAATTTCTTAAATTTCTGGGTAATTGTCTTTTTAAAGAAGCTAATAA
AGGACTCCCGTTACCTGCTATATTAATGAATTTAAAATGTTTTCAAAATGATTTAATTAAATTCATAGAACAAGGAGAGA
AAAATGGAAAATTAGATATAGAATTAAAGTTATACAGTCAAATGTTATTACAGCAATTTGAGGAAAAAGTGTTAAAACAA
ACAAAATTTATACAACCTATCATCTTCTTTATCTTGGGAATATTTATTGTATCTTTATACTTAGTCATTATGCTTCCTAT
GTTCGAACTTATGCAAACAATAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(26-145)

Type II secretion system (T2SS), protein F (T2SSF)

(226-346)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Staphylococcus aureus MW2

48.596

100

0.487
  comGB Staphylococcus aureus N315

48.596

100

0.487