Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   Q9L40_RS11275 Genome accession   NZ_CP132190
Coordinates   1328249..1330084 (-) Length   611 a.a.
NCBI ID   WP_305799455.1    Uniprot ID   -
Organism   Vibrio cholerae strain DRC187     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1323249..1335084
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q9L40_RS11255 (Q9L40_11255) fhuA 1323325..1325424 (-) 2100 WP_305799053.1 TonB-dependent siderophore receptor FhuA -
  Q9L40_RS11260 (Q9L40_11260) - 1325559..1327388 (+) 1830 WP_181711643.1 ABC transporter ATP-binding protein -
  Q9L40_RS11265 (Q9L40_11265) - 1327424..1327786 (-) 363 WP_029628110.1 hypothetical protein -
  Q9L40_RS11270 (Q9L40_11270) - 1327957..1328256 (-) 300 WP_113622149.1 DUF3630 family protein -
  Q9L40_RS11275 (Q9L40_11275) recQ 1328249..1330084 (-) 1836 WP_305799455.1 ATP-dependent DNA helicase RecQ Machinery gene
  Q9L40_RS11280 (Q9L40_11280) rarD 1330311..1331159 (+) 849 WP_002030513.1 EamA family transporter RarD -
  Q9L40_RS11285 (Q9L40_11285) - 1331261..1332088 (+) 828 WP_029628107.1 AraC family transcriptional regulator -
  Q9L40_RS11290 (Q9L40_11290) - 1332163..1332831 (+) 669 WP_305799052.1 LysE family translocator -

Sequence

Protein


Download         Length: 611 a.a.        Molecular weight: 69143.47 Da        Isoelectric Point: 7.0928

>NTDB_id=795602 Q9L40_RS11275 WP_305799455.1 1328249..1330084(-) (recQ) [Vibrio cholerae strain DRC187]
MTATLMAESSTLLATPERVLHEVFGYQQFRVGQQEVIEAALVGRDSLVIMPTGGGKSLCYQIPALVLEGVTLVISPLISL
MKDQVDQLKANGVAAECVNSTLAREELIAIYNRMHAGQLKLLYVSPERVLTAEFIERLSHLPLAMIAVDEAHCISQWGHD
FRPEYASLGQLKQRFPNVPVMALTATADDATRHDIMQRLQLNEPQQYLGSFDRPNIRYMLVEKHKPVSQVIRYLETQRGQ
CGIIYCGSRKKVEMLTEKLCGNHIRAASYHAGMDADERAWVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNI
ESYYQETGRAGRDGLPAEAMMLYDPADMNWLRRMLDEKPDGAQKQVESHKLTAMGAFAEAQTCRRQVLLNYFGEYRDKPC
GNCDICLDPPKRFDATEEARKALSCVYRVNQNFGIGYVVEVLRGMQNIRIREHGHDKITTYGIGRDHSHDYWVSIFRQLI
HKGMLYQNITRNSTLQLTEEARPLLRGEMNIELAVPRLDTAARAAKSDKLSGKNYDKKLFAKLRKLRKSIADDEGLPPYV
VFSDATLIDMAEIMPTSYGEMLAVNGVGQRKLEKYADPFLDLIQEHLTYHG

Nucleotide


Download         Length: 1836 bp        

>NTDB_id=795602 Q9L40_RS11275 WP_305799455.1 1328249..1330084(-) (recQ) [Vibrio cholerae strain DRC187]
ATGACCGCGACTTTAATGGCTGAATCTTCTACTCTCCTTGCCACCCCTGAACGTGTTTTGCACGAGGTGTTTGGCTATCA
GCAATTTCGCGTTGGTCAGCAAGAGGTGATTGAGGCGGCGCTGGTTGGGCGTGATAGCTTGGTCATTATGCCGACTGGTG
GTGGTAAATCGCTCTGTTACCAGATCCCTGCACTGGTGCTGGAAGGAGTCACGTTGGTGATTTCTCCCCTGATTTCGCTT
ATGAAAGATCAGGTTGACCAGCTTAAAGCCAACGGTGTCGCCGCCGAGTGTGTCAATTCCACCTTGGCGCGCGAGGAGCT
GATCGCGATTTACAATCGCATGCATGCTGGCCAGCTCAAGCTGCTGTATGTGTCGCCAGAGCGGGTATTGACCGCCGAGT
TTATCGAACGGCTCAGCCATCTGCCGTTAGCCATGATTGCGGTTGATGAAGCGCACTGTATTTCGCAATGGGGACACGAT
TTTCGCCCTGAATACGCCTCATTAGGCCAGCTTAAGCAGCGTTTCCCGAATGTGCCGGTGATGGCGCTGACGGCGACTGC
GGATGACGCGACCCGTCACGACATTATGCAGCGTTTGCAGCTCAATGAGCCGCAGCAGTATCTGGGCAGTTTTGATCGCC
CGAATATTCGCTACATGCTGGTGGAAAAACACAAGCCGGTTTCACAAGTGATCCGTTATCTGGAAACTCAGCGTGGGCAG
TGCGGCATCATCTATTGTGGTAGCCGTAAAAAAGTCGAAATGCTCACCGAAAAGCTGTGCGGCAACCACATTCGCGCCGC
CAGTTACCATGCCGGGATGGACGCCGATGAACGCGCTTGGGTGCAAGAGGCGTTTCAGCGTGATGACCTGCAAATTGTGG
TGGCGACCGTGGCGTTTGGCATGGGGATTAATAAACCCAACGTGCGCTTTGTGGTGCATTTTGATATTCCACGCAACATT
GAATCCTACTATCAGGAAACTGGCCGCGCAGGGCGTGATGGTCTGCCTGCTGAAGCCATGATGCTGTACGACCCTGCTGA
CATGAACTGGCTGCGCCGCATGCTCGATGAAAAGCCTGATGGCGCGCAAAAACAGGTCGAAAGCCACAAGCTCACCGCCA
TGGGCGCGTTTGCTGAAGCACAAACTTGTCGCCGCCAAGTGCTGCTCAATTATTTTGGCGAATATCGCGATAAGCCGTGT
GGCAACTGTGATATCTGCCTCGATCCACCCAAGCGTTTTGATGCAACGGAAGAGGCGCGCAAAGCGCTGTCGTGTGTCTA
TCGCGTTAATCAAAACTTCGGGATTGGTTATGTGGTGGAAGTGCTGCGCGGGATGCAGAACATCCGGATTCGCGAGCATG
GCCACGACAAAATCACCACCTACGGTATCGGCCGCGATCACAGCCACGATTACTGGGTGAGTATTTTCCGCCAACTGATC
CACAAAGGCATGCTCTACCAAAACATCACGCGTAACTCGACATTGCAACTGACCGAAGAAGCGCGCCCTTTGCTGCGCGG
TGAAATGAATATTGAGCTGGCGGTACCGCGTTTAGATACCGCGGCGCGCGCGGCGAAATCCGATAAGTTGTCGGGTAAAA
ACTACGACAAAAAGCTGTTTGCCAAACTGCGTAAGCTGCGTAAATCGATCGCCGACGACGAAGGGTTACCACCGTATGTG
GTGTTCAGTGATGCCACCTTGATTGATATGGCGGAGATCATGCCGACCTCTTATGGCGAAATGTTGGCGGTGAATGGGGT
TGGGCAGCGCAAGCTGGAAAAATACGCCGACCCGTTTTTGGATCTGATTCAGGAGCATTTGACCTATCATGGCTGA

Domains

Predicted by InterProScan.

RecQ zinc-binding (RecQ_Zn_bind)

(346-407)

DEAD/DEAH box helicase (DEAD)

(33-188)

Helicase conserved C-terminal domain (Helicase_C)

(229-333)

HRDC domain (HRDC)

(537-603)

RQC domain (RQC)

(409-517)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

40.468

97.872

0.396