Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYC   Type   Machinery gene
Locus tag   PWF74_RS10185 Genome accession   NZ_CP118627
Coordinates   2039154..2039459 (+) Length   101 a.a.
NCBI ID   WP_416274244.1    Uniprot ID   -
Organism   Lactococcus garvieae strain Pa-2     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2034154..2044459
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PWF74_RS10165 (PWF74_10165) guaB 2035265..2036746 (+) 1482 WP_165705510.1 IMP dehydrogenase -
  PWF74_RS10170 (PWF74_10170) rpsU 2036869..2037045 (+) 177 WP_003134539.1 30S ribosomal protein S21 -
  PWF74_RS10175 (PWF74_10175) comGA 2037233..2038177 (+) 945 WP_165705597.1 competence type IV pilus ATPase ComGA Machinery gene
  PWF74_RS10180 (PWF74_10180) comGB 2038116..2039135 (+) 1020 WP_270252906.1 competence type IV pilus assembly protein ComGB Machinery gene
  PWF74_RS10185 (PWF74_10185) comYC 2039154..2039459 (+) 306 WP_416274244.1 competence type IV pilus major pilin ComGC Machinery gene
  PWF74_RS10190 (PWF74_10190) comGD 2039434..2039850 (+) 417 WP_165705512.1 competence type IV pilus minor pilin ComGD -
  PWF74_RS10195 (PWF74_10195) comGE 2039882..2040115 (+) 234 WP_229031266.1 competence type IV pilus minor pilin ComGE -
  PWF74_RS10200 (PWF74_10200) comGF 2040096..2040536 (+) 441 WP_165705513.1 competence type IV pilus minor pilin ComGF -
  PWF74_RS10205 (PWF74_10205) - 2040769..2041614 (+) 846 WP_165705514.1 metal ABC transporter solute-binding protein, Zn/Mn family -
  PWF74_RS10210 (PWF74_10210) - 2041700..2042569 (-) 870 WP_003133725.1 RluA family pseudouridine synthase -

Sequence

Protein


Download         Length: 101 a.a.        Molecular weight: 11445.33 Da        Isoelectric Point: 9.9218

>NTDB_id=794070 PWF74_RS10185 WP_416274244.1 2039154..2039459(+) (comYC) [Lactococcus garvieae strain Pa-2]
MEKKRFKAFTLIEMLVVLLIISVLLLLFVPNLSKEKKNIQNTGQTAFVKVVEGQAELYQLDKQDSPSLGKLVSGGLITQK
QADSYNDYYTKNPNEKRNVPN

Nucleotide


Download         Length: 306 bp        

>NTDB_id=794070 PWF74_RS10185 WP_416274244.1 2039154..2039459(+) (comYC) [Lactococcus garvieae strain Pa-2]
ATGGAAAAAAAGAGGTTCAAAGCTTTTACTTTGATTGAAATGCTTGTCGTCTTACTTATTATCAGTGTCTTACTTTTATT
GTTTGTCCCAAATTTGTCTAAAGAAAAGAAGAATATCCAAAATACGGGTCAAACAGCGTTTGTTAAAGTTGTCGAAGGTC
AAGCCGAACTTTATCAACTTGATAAACAGGATAGTCCTAGCTTAGGGAAACTTGTCTCCGGTGGGTTAATTACACAGAAA
CAAGCCGATAGCTACAATGATTATTATACTAAGAACCCAAATGAAAAACGTAATGTACCGAATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(4-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYC Streptococcus gordonii str. Challis substr. CH1

61.765

100

0.624
  comYC Streptococcus mutans UA140

66.316

94.059

0.624
  comYC Streptococcus mutans UA159

66.316

94.059

0.624
  comGC Lactococcus lactis subsp. cremoris KW2

61

99.01

0.604
  comGC/cglC Streptococcus mitis SK321

60.606

98.02

0.594
  comGC/cglC Streptococcus pneumoniae Rx1

56.566

98.02

0.554
  comGC/cglC Streptococcus pneumoniae D39

56.566

98.02

0.554
  comGC/cglC Streptococcus pneumoniae TIGR4

56.566

98.02

0.554
  comGC/cglC Streptococcus pneumoniae R6

56.566

98.02

0.554
  comGC/cglC Streptococcus mitis NCTC 12261

60.44

90.099

0.545
  comYC Streptococcus suis isolate S10

56.79

80.198

0.455
  comGC Staphylococcus aureus MW2

49.367

78.218

0.386
  comGC Staphylococcus aureus N315

49.367

78.218

0.386