Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   KH172YL63_RS08055 Genome accession   NZ_AP022842
Coordinates   1619363..1620400 (+) Length   345 a.a.
NCBI ID   WP_173105620.1    Uniprot ID   -
Organism   Bacillus sp. KH172YL63     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1614363..1625400
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KH172YL63_RS08030 (KH172YL63_15560) - 1614895..1615152 (+) 258 WP_173105615.1 DUF3243 domain-containing protein -
  KH172YL63_RS08035 (KH172YL63_15570) - 1615344..1616135 (+) 792 WP_173105616.1 DUF3388 domain-containing protein -
  KH172YL63_RS08040 (KH172YL63_15580) - 1616155..1617051 (+) 897 WP_173105617.1 helix-turn-helix domain-containing protein -
  KH172YL63_RS08045 (KH172YL63_15590) pgsA 1617135..1617713 (+) 579 WP_173105618.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  KH172YL63_RS08050 (KH172YL63_15600) cinA 1617778..1619013 (+) 1236 WP_173105619.1 competence/damage-inducible protein A Machinery gene
  KH172YL63_RS08055 (KH172YL63_15610) recA 1619363..1620400 (+) 1038 WP_173105620.1 recombinase RecA Machinery gene
  KH172YL63_RS08060 (KH172YL63_15620) rny 1620810..1622369 (+) 1560 WP_173105621.1 ribonuclease Y -
  KH172YL63_RS08065 (KH172YL63_15630) - 1622505..1623308 (+) 804 WP_173105622.1 TIGR00282 family metallophosphoesterase -
  KH172YL63_RS08070 (KH172YL63_15640) spoVS 1623444..1623704 (+) 261 WP_034760060.1 stage V sporulation protein SpoVS -
  KH172YL63_RS08075 (KH172YL63_15650) - 1623804..1624727 (+) 924 WP_173105623.1 dipeptidase -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 37292.53 Da        Isoelectric Point: 5.0035

>NTDB_id=79339 KH172YL63_RS08055 WP_173105620.1 1619363..1620400(+) (recA) [Bacillus sp. KH172YL63]
MSDRKAALDMALKQIEKQFGKGSIMKLGEQTDRKVVTCPSGSLALDAALGVGGYPRGRIVEVYGPESSGKTTVALHAIAE
VQAQGGQAAFIDAEHALDPEYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDAIVIDSVAALVPKAEIEGEMGDA
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAETLKQGNEMVGNKT
KIKVVKNKVAPPFRVAEVDIMYGEGISKEGEIVDLGSELDIVQKSGAWYSYNEERLGQGRENAKVFLKENPEIRTEIMLK
IREHYGLDTGRAETDEDGALSLLED

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=79339 KH172YL63_RS08055 WP_173105620.1 1619363..1620400(+) (recA) [Bacillus sp. KH172YL63]
GTGAGCGATCGTAAAGCAGCCTTGGATATGGCGTTAAAACAAATAGAAAAACAATTTGGTAAAGGCTCTATCATGAAGCT
TGGGGAACAAACCGATAGAAAAGTGGTAACATGCCCTAGTGGATCCCTTGCACTTGATGCAGCACTTGGAGTGGGCGGAT
ACCCACGTGGACGAATCGTTGAGGTGTATGGTCCCGAATCATCCGGTAAAACGACAGTGGCGCTTCACGCAATTGCAGAA
GTTCAGGCACAGGGTGGACAAGCGGCATTCATCGATGCAGAGCACGCTCTTGATCCGGAATATGCACAGAAGCTGGGCGT
AAATATAGATGAACTATTATTATCTCAACCTGATACAGGGGAGCAGGCGCTGGAAATCGCTGAAGCGCTGGTTCGCAGTG
GAGCGGTTGATGCAATCGTCATCGACTCAGTGGCAGCCCTTGTACCAAAAGCTGAGATTGAAGGGGAAATGGGAGATGCC
CACGTTGGTCTTCAGGCCCGTTTAATGTCACAGGCCCTTCGTAAGCTTTCAGGTGCCATCAATAAATCGAAAACCATCGC
GATTTTCATTAACCAAATTCGTGAAAAGGTCGGCGTCATGTTTGGTAACCCGGAAACGACTCCTGGTGGACGTGCGCTTA
AATTCTACTCTTCTGTCCGTCTTGAAGTCAGAAGAGCCGAAACCCTTAAACAGGGTAACGAAATGGTAGGTAACAAAACG
AAAATCAAAGTAGTGAAAAACAAAGTTGCGCCACCGTTCCGCGTGGCTGAGGTTGATATCATGTACGGTGAGGGAATCTC
CAAAGAAGGTGAGATTGTCGATCTTGGATCTGAACTGGATATCGTTCAGAAAAGTGGTGCGTGGTACTCATATAACGAAG
AGCGTCTCGGTCAGGGACGTGAAAACGCCAAAGTTTTCCTTAAGGAAAACCCTGAGATCCGGACTGAAATCATGCTGAAA
ATCCGTGAGCATTACGGGCTGGATACAGGCCGTGCCGAAACGGATGAAGATGGTGCGCTTAGCCTGTTAGAAGATTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

88.754

95.362

0.846
  recA Latilactobacillus sakei subsp. sakei 23K

73.41

100

0.736
  recA Streptococcus mitis NCTC 12261

68.023

99.71

0.678
  recA Streptococcus mutans UA159

70.517

95.362

0.672
  recA Streptococcus mitis SK321

67.836

99.13

0.672
  recA Streptococcus pneumoniae Rx1

67.941

98.551

0.67
  recA Streptococcus pneumoniae D39

67.941

98.551

0.67
  recA Streptococcus pneumoniae R6

67.941

98.551

0.67
  recA Streptococcus pneumoniae TIGR4

67.941

98.551

0.67
  recA Streptococcus pyogenes NZ131

69.207

95.072

0.658
  recA Lactococcus lactis subsp. cremoris KW2

67.879

95.652

0.649
  recA Neisseria gonorrhoeae strain FA1090

65.192

98.261

0.641
  recA Neisseria gonorrhoeae MS11

65.192

98.261

0.641
  recA Neisseria gonorrhoeae MS11

65.192

98.261

0.641
  recA Ralstonia pseudosolanacearum GMI1000

69.649

90.725

0.632
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.732

93.043

0.612
  recA Vibrio cholerae strain A1552

65.732

93.043

0.612
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.22

94.783

0.609
  recA Acinetobacter baylyi ADP1

64.615

94.203

0.609
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.609

94.783

0.603
  recA Pseudomonas stutzeri DSM 10701

64.688

92.754

0.6
  recA Acinetobacter baumannii D1279779

63.11

95.072

0.6
  recA Helicobacter pylori strain NCTC11637

63.385

94.203

0.597
  recA Helicobacter pylori 26695

63.385

94.203

0.597
  recA Glaesserella parasuis strain SC1401

63.95

92.464

0.591
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.615

94.203

0.571

Multiple sequence alignment