Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   KH172YL63_RS08050 Genome accession   NZ_AP022842
Coordinates   1617778..1619013 (+) Length   411 a.a.
NCBI ID   WP_173105619.1    Uniprot ID   -
Organism   Bacillus sp. KH172YL63     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1612778..1624013
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KH172YL63_RS08025 (KH172YL63_15550) - 1614096..1614812 (+) 717 WP_173105614.1 SDR family oxidoreductase -
  KH172YL63_RS08030 (KH172YL63_15560) - 1614895..1615152 (+) 258 WP_173105615.1 DUF3243 domain-containing protein -
  KH172YL63_RS08035 (KH172YL63_15570) - 1615344..1616135 (+) 792 WP_173105616.1 DUF3388 domain-containing protein -
  KH172YL63_RS08040 (KH172YL63_15580) - 1616155..1617051 (+) 897 WP_173105617.1 helix-turn-helix domain-containing protein -
  KH172YL63_RS08045 (KH172YL63_15590) pgsA 1617135..1617713 (+) 579 WP_173105618.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  KH172YL63_RS08050 (KH172YL63_15600) cinA 1617778..1619013 (+) 1236 WP_173105619.1 competence/damage-inducible protein A Machinery gene
  KH172YL63_RS08055 (KH172YL63_15610) recA 1619363..1620400 (+) 1038 WP_173105620.1 recombinase RecA Machinery gene
  KH172YL63_RS08060 (KH172YL63_15620) rny 1620810..1622369 (+) 1560 WP_173105621.1 ribonuclease Y -
  KH172YL63_RS08065 (KH172YL63_15630) - 1622505..1623308 (+) 804 WP_173105622.1 TIGR00282 family metallophosphoesterase -
  KH172YL63_RS08070 (KH172YL63_15640) spoVS 1623444..1623704 (+) 261 WP_034760060.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 411 a.a.        Molecular weight: 44388.69 Da        Isoelectric Point: 5.4930

>NTDB_id=79338 KH172YL63_RS08050 WP_173105619.1 1617778..1619013(+) (cinA) [Bacillus sp. KH172YL63]
MNAEIIAVGSELLLGQIVNSNAQYISEELAGIGVNVYYHTSVGDNPKRLLEAVKVAQGRADLLIFTGGLGPTKDDLTKET
IADALGTSLTMDGEALDSIRNYFRKVNRTMTPNNEKQALILQGSDVLKNDHGMAPGMLLIKDGKAYMLLPGPPSEMRPMF
SAYGKQAIYALLKKKEIIHSRVLRFFGIGEAQLETELEELIDQQSNPTIAPLAADGEVTLRLTAKHESEDVAGKLLDDVE
EEIMKVAGEYFYGYNEDSLVGVGFNLMKEKKLTLSCAESLTGGLFQSQLASLKGASSVLNGGVVCYQDEVKTKVLSVRES
TLKTHSAVSEQCAKELAENVRVLLASDIGISFTGVAGPGEHEGHPSGTVWIGLAQDGQPTKAFKLNLAGGRNGNRLRATK
FGWHYLIKSLS

Nucleotide


Download         Length: 1236 bp        

>NTDB_id=79338 KH172YL63_RS08050 WP_173105619.1 1617778..1619013(+) (cinA) [Bacillus sp. KH172YL63]
ATGAATGCAGAAATCATTGCGGTAGGTTCAGAGTTGCTTTTAGGACAAATCGTCAATTCAAATGCCCAGTACATATCAGA
AGAGCTGGCAGGGATCGGGGTGAATGTGTATTATCATACGAGTGTCGGTGACAACCCGAAAAGATTGCTCGAAGCCGTCA
AAGTAGCACAGGGGAGAGCTGATTTACTGATCTTTACCGGGGGGCTCGGGCCAACCAAGGATGACCTGACAAAAGAAACG
ATAGCGGATGCGCTTGGCACTTCGCTGACAATGGACGGGGAAGCGCTGGATTCAATCCGGAACTATTTCAGGAAAGTGAA
CCGGACTATGACACCAAATAATGAAAAGCAGGCTCTCATATTGCAAGGCTCGGATGTACTTAAAAATGATCACGGTATGG
CGCCCGGCATGTTGTTAATAAAAGATGGGAAAGCATATATGCTCTTACCCGGCCCTCCTTCTGAAATGAGACCAATGTTC
AGTGCTTACGGCAAGCAGGCCATTTACGCCTTGTTAAAAAAGAAAGAGATCATTCACTCAAGGGTACTGCGCTTCTTTGG
GATTGGTGAAGCCCAGCTGGAAACAGAACTTGAGGAACTGATCGATCAACAATCAAATCCGACGATCGCCCCCCTTGCCG
CTGACGGTGAAGTGACCCTCCGGTTAACCGCCAAACATGAATCAGAAGACGTGGCCGGAAAGCTTCTTGATGATGTGGAA
GAAGAGATCATGAAAGTAGCCGGTGAATATTTCTACGGGTACAACGAAGATTCCCTCGTCGGGGTCGGATTCAACTTGAT
GAAGGAGAAGAAGCTTACTCTATCATGTGCAGAGAGTCTTACAGGCGGGCTTTTCCAATCTCAATTGGCCTCCCTTAAAG
GAGCATCTTCCGTCCTGAACGGCGGGGTCGTGTGTTACCAGGACGAAGTGAAAACAAAAGTGTTATCCGTGAGGGAAAGT
ACGCTGAAAACACACTCAGCTGTGAGTGAGCAGTGCGCAAAGGAACTTGCGGAAAATGTAAGGGTGCTTCTGGCATCTGA
TATAGGGATCAGCTTTACCGGTGTGGCAGGGCCGGGGGAACATGAAGGTCATCCGTCCGGGACGGTGTGGATCGGCTTGG
CGCAGGATGGCCAACCGACAAAGGCATTCAAGCTGAATCTCGCCGGAGGCCGAAACGGGAACCGGCTGCGGGCAACCAAA
TTCGGCTGGCATTATCTGATCAAGTCATTGAGTTGA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-165)

Competence-damaged protein (CinA)

(264-409)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

57.108

99.27

0.567
  cinA Streptococcus pneumoniae Rx1

46.793

100

0.479
  cinA Streptococcus mitis NCTC 12261

46.793

100

0.479
  cinA Streptococcus pneumoniae R6

46.793

100

0.479
  cinA Streptococcus pneumoniae TIGR4

48.03

98.783

0.474
  cinA Streptococcus mitis SK321

48.03

98.783

0.474
  cinA Streptococcus pneumoniae D39

47.537

98.783

0.47
  cinA Streptococcus mutans UA159

47.88

97.567

0.467
  cinA Streptococcus suis isolate S10

39.952

100

0.406

Multiple sequence alignment