Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   KH172YL63_RS07655 Genome accession   NZ_AP022842
Coordinates   1536820..1537599 (+) Length   259 a.a.
NCBI ID   WP_173105546.1    Uniprot ID   A0A6F8TPR7
Organism   Bacillus sp. KH172YL63     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1531820..1542599
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KH172YL63_RS07635 (KH172YL63_14760) trmFO 1532421..1533719 (+) 1299 WP_173105542.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  KH172YL63_RS07640 (KH172YL63_14770) xerC 1533781..1534680 (+) 900 WP_173105543.1 tyrosine recombinase XerC -
  KH172YL63_RS07645 (KH172YL63_14780) hslV 1534701..1535243 (+) 543 WP_173105544.1 ATP-dependent protease subunit HslV -
  KH172YL63_RS07650 (KH172YL63_14790) hslU 1535311..1536723 (+) 1413 WP_173105545.1 HslU--HslV peptidase ATPase subunit -
  KH172YL63_RS07655 (KH172YL63_14800) codY 1536820..1537599 (+) 780 WP_173105546.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  KH172YL63_RS07660 (KH172YL63_14810) flgB 1538767..1539153 (+) 387 WP_173105547.1 flagellar basal body rod protein FlgB -
  KH172YL63_RS07665 (KH172YL63_14820) flgC 1539156..1539617 (+) 462 WP_173105548.1 flagellar basal body rod protein FlgC -
  KH172YL63_RS07670 (KH172YL63_14830) fliE 1539637..1539942 (+) 306 WP_173105549.1 flagellar hook-basal body complex protein FliE -
  KH172YL63_RS07675 (KH172YL63_14840) fliF 1539976..1541574 (+) 1599 WP_173105550.1 flagellar basal-body MS-ring/collar protein FliF -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28879.17 Da        Isoelectric Point: 4.7933

>NTDB_id=79337 KH172YL63_RS07655 WP_173105546.1 1536820..1537599(+) (codY) [Bacillus sp. KH172YL63]
MNLLGKTRTINAMLQKAAGKPVNFKEMSETLSKVIEANVFVVSRRGKLLGYAINQQIENERMKQMLADRQFPEEYTQNLF
NISETSPNLDVNSEYTAFPVENREFFKNGLTTIVPIIGGGERLGTLILARLEASFEDDDLILAEYGATVVGMEILREKAE
EIEVEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLVELDKLRTN

Nucleotide


Download         Length: 780 bp        

>NTDB_id=79337 KH172YL63_RS07655 WP_173105546.1 1536820..1537599(+) (codY) [Bacillus sp. KH172YL63]
ATGAATTTATTAGGTAAAACAAGAACAATCAATGCAATGTTGCAAAAAGCTGCGGGTAAACCGGTTAATTTCAAAGAAAT
GTCTGAAACCCTGAGCAAGGTGATCGAAGCGAATGTATTCGTCGTGAGCCGCAGAGGTAAATTACTTGGATATGCAATCA
ATCAACAAATTGAAAATGAGCGTATGAAACAAATGTTGGCTGATCGTCAATTCCCGGAAGAGTATACGCAAAATCTTTTC
AATATCAGTGAAACTTCACCAAACCTGGATGTAAACAGCGAATATACTGCATTCCCGGTGGAGAACAGAGAGTTCTTCAA
AAACGGTCTTACAACGATCGTACCGATCATCGGTGGGGGAGAAAGACTTGGAACATTGATCCTTGCGCGCCTTGAAGCAA
GCTTCGAGGATGATGACCTTATCCTTGCAGAGTATGGTGCGACAGTTGTTGGAATGGAAATCCTTCGTGAGAAAGCTGAA
GAAATCGAAGTGGAAGCACGAAGCAAAGCTGTAGTCCAAATGGCGATCAGTTCATTATCTTACAGTGAGCTTGAAGCAAT
CGAGCACATCTTTGAAGAACTTGATGGAAATGAAGGACTTTTAGTCGCTTCTAAAATTGCCGACAGAGTCGGAATTACCC
GTTCTGTCATCGTCAATGCACTCCGCAAGCTGGAAAGTGCCGGAGTGATCGAATCACGTTCACTTGGAATGAAAGGAACA
TACATCAAAGTATTGAACAACAAGTTCCTTGTTGAATTGGATAAGTTACGTACAAATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-254)

CodY GAF-like domain (CodY)

(2-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6F8TPR7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

86.1

100

0.861
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.638

98.069

0.467

Multiple sequence alignment