Detailed information
Bioinformatically predicted
Overview
| Name | pilA/pilAI | Type | Machinery gene |
| Locus tag | PWE35_RS16475 | Genome accession | NZ_CP118547 |
| Coordinates | 3540849..3541256 (-) | Length | 135 a.a. |
| NCBI ID | WP_024956772.1 | Uniprot ID | - |
| Organism | Stenotrophomonas maltophilia strain HT2 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3535849..3546256
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PWE35_RS16465 (PWE35_16465) | pilR | 3537392..3538765 (+) | 1374 | WP_005410795.1 | sigma-54 dependent transcriptional regulator | Regulator |
| PWE35_RS16470 (PWE35_16470) | pilB | 3538892..3540625 (-) | 1734 | WP_005414305.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| PWE35_RS16475 (PWE35_16475) | pilA/pilAI | 3540849..3541256 (-) | 408 | WP_024956772.1 | pilin | Machinery gene |
| PWE35_RS16480 (PWE35_16480) | - | 3541409..3541846 (-) | 438 | WP_024956771.1 | pilin | - |
| PWE35_RS16485 (PWE35_16485) | pilC | 3542199..3543458 (+) | 1260 | WP_049452341.1 | type II secretion system F family protein | Machinery gene |
| PWE35_RS16490 (PWE35_16490) | - | 3543466..3544329 (+) | 864 | WP_005410800.1 | A24 family peptidase | - |
| PWE35_RS16495 (PWE35_16495) | coaE | 3544341..3544952 (+) | 612 | WP_164225734.1 | dephospho-CoA kinase | - |
| PWE35_RS16500 (PWE35_16500) | - | 3545287..3546201 (+) | 915 | WP_005407612.1 | IS110-like element ISStma6 family transposase | - |
Sequence
Protein
Download Length: 135 a.a. Molecular weight: 14252.43 Da Isoelectric Point: 6.2109
>NTDB_id=793257 PWE35_RS16475 WP_024956772.1 3540849..3541256(-) (pilA/pilAI) [Stenotrophomonas maltophilia strain HT2]
MNTQKGFTLIELMIVVAIIAILAAIAAVAFQPYVVRTQLAAALADITPGKTKVEILVNENRPASLITPEFIGGAQNAHCS
NVEAELSDSGVGHISCTLKGHSALDGKDLILRRSAEGIWSCDGSAFEARYRPTGC
MNTQKGFTLIELMIVVAIIAILAAIAAVAFQPYVVRTQLAAALADITPGKTKVEILVNENRPASLITPEFIGGAQNAHCS
NVEAELSDSGVGHISCTLKGHSALDGKDLILRRSAEGIWSCDGSAFEARYRPTGC
Nucleotide
Download Length: 408 bp
>NTDB_id=793257 PWE35_RS16475 WP_024956772.1 3540849..3541256(-) (pilA/pilAI) [Stenotrophomonas maltophilia strain HT2]
ATGAACACGCAGAAGGGCTTCACGCTCATCGAACTGATGATCGTGGTGGCCATCATCGCCATCCTTGCGGCGATTGCGGC
TGTGGCATTTCAGCCATACGTCGTGCGCACCCAGTTGGCGGCGGCACTTGCGGATATCACGCCGGGAAAGACCAAGGTGG
AAATCCTCGTCAACGAGAACCGTCCGGCCAGTCTGATCACCCCCGAGTTCATCGGTGGCGCCCAGAACGCCCACTGCTCC
AACGTCGAAGCCGAACTCAGCGATTCCGGCGTCGGCCATATCAGCTGCACCTTGAAGGGACACAGCGCGCTGGACGGCAA
GGACCTGATCCTGCGCCGCTCCGCCGAGGGCATCTGGAGCTGCGATGGCAGCGCGTTCGAAGCGCGCTATCGCCCGACCG
GCTGCTGA
ATGAACACGCAGAAGGGCTTCACGCTCATCGAACTGATGATCGTGGTGGCCATCATCGCCATCCTTGCGGCGATTGCGGC
TGTGGCATTTCAGCCATACGTCGTGCGCACCCAGTTGGCGGCGGCACTTGCGGATATCACGCCGGGAAAGACCAAGGTGG
AAATCCTCGTCAACGAGAACCGTCCGGCCAGTCTGATCACCCCCGAGTTCATCGGTGGCGCCCAGAACGCCCACTGCTCC
AACGTCGAAGCCGAACTCAGCGATTCCGGCGTCGGCCATATCAGCTGCACCTTGAAGGGACACAGCGCGCTGGACGGCAA
GGACCTGATCCTGCGCCGCTCCGCCGAGGGCATCTGGAGCTGCGATGGCAGCGCGTTCGAAGCGCGCTATCGCCCGACCG
GCTGCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
50.735 |
100 |
0.511 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
43.382 |
100 |
0.437 |
| pilA | Pseudomonas aeruginosa PAK |
38.255 |
100 |
0.422 |
| pilA | Acinetobacter baumannii strain A118 |
40.876 |
100 |
0.415 |
| comP | Acinetobacter baylyi ADP1 |
35.57 |
100 |
0.393 |
| pilA | Vibrio cholerae C6706 |
34.694 |
100 |
0.378 |
| pilA | Vibrio cholerae strain A1552 |
34.694 |
100 |
0.378 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
34.694 |
100 |
0.378 |
| pilA | Ralstonia pseudosolanacearum GMI1000 |
36.842 |
98.519 |
0.363 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
35.507 |
100 |
0.363 |