Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   PWE35_RS16485 Genome accession   NZ_CP118547
Coordinates   3542199..3543458 (+) Length   419 a.a.
NCBI ID   WP_049452341.1    Uniprot ID   -
Organism   Stenotrophomonas maltophilia strain HT2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3537199..3548458
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PWE35_RS16465 (PWE35_16465) pilR 3537392..3538765 (+) 1374 WP_005410795.1 sigma-54 dependent transcriptional regulator Regulator
  PWE35_RS16470 (PWE35_16470) pilB 3538892..3540625 (-) 1734 WP_005414305.1 type IV-A pilus assembly ATPase PilB Machinery gene
  PWE35_RS16475 (PWE35_16475) pilA/pilAI 3540849..3541256 (-) 408 WP_024956772.1 pilin Machinery gene
  PWE35_RS16480 (PWE35_16480) - 3541409..3541846 (-) 438 WP_024956771.1 pilin -
  PWE35_RS16485 (PWE35_16485) pilC 3542199..3543458 (+) 1260 WP_049452341.1 type II secretion system F family protein Machinery gene
  PWE35_RS16490 (PWE35_16490) - 3543466..3544329 (+) 864 WP_005410800.1 A24 family peptidase -
  PWE35_RS16495 (PWE35_16495) coaE 3544341..3544952 (+) 612 WP_164225734.1 dephospho-CoA kinase -
  PWE35_RS16500 (PWE35_16500) - 3545287..3546201 (+) 915 WP_005407612.1 IS110-like element ISStma6 family transposase -
  PWE35_RS16505 (PWE35_16505) - 3546213..3546599 (-) 387 WP_043034308.1 hypothetical protein -
  PWE35_RS16510 (PWE35_16510) - 3547082..3548449 (-) 1368 WP_043034309.1 HAMP domain-containing sensor histidine kinase -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45902.33 Da        Isoelectric Point: 10.1071

>NTDB_id=793258 PWE35_RS16485 WP_049452341.1 3542199..3543458(+) (pilC) [Stenotrophomonas maltophilia strain HT2]
MSVSRSAIKKEPVARATMELQPFVWEGTDKRGVKMKGEQLAKNANLLRAELRRQGINPGQVKPKSKPLFGAAGSPVKPKD
IAFFSRQMATMMKSGVPIVSALDIIASGHKNPRMKKLVDTIRTDIEGGSSMYEAVSKHPVQFDELYRNLVRAGEGAGVLE
TVLDTVATYKENIEALKGKIKKALFYPIMVVVVAMLVSGIMLVFVVPQFEDVFKSFGAELPAFTQLVVNLSRFMVSWWWL
MLLVAIGTAVALVMSYKRSPKMQHAMDRFVLKVPVIGQIMHNSAIARFSRTTAVTFKAGVPLVEALGIVAGATGNTVYEE
AVLRMRDDVSVGYPVNMSMKQTNLFPHMVIQMTGIGEEAGALDAMLFKVAEYYEQEVNNSVDALSSLLEPMIMVFIGTIV
GGMVIAMYLPIFKLGAVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=793258 PWE35_RS16485 WP_049452341.1 3542199..3543458(+) (pilC) [Stenotrophomonas maltophilia strain HT2]
ATGTCTGTCAGTCGCAGTGCGATCAAGAAAGAGCCGGTGGCGCGTGCCACCATGGAGCTGCAGCCGTTTGTCTGGGAGGG
GACCGACAAGCGGGGCGTGAAGATGAAGGGCGAGCAGCTGGCCAAGAACGCCAACCTGCTGCGCGCCGAGCTGCGCCGCC
AAGGCATCAACCCGGGCCAGGTCAAGCCGAAGTCGAAGCCGCTGTTCGGCGCTGCCGGCAGCCCGGTCAAGCCCAAGGAC
ATCGCCTTCTTCAGCCGGCAGATGGCCACGATGATGAAATCCGGCGTGCCGATCGTGTCGGCGCTGGACATCATCGCCAG
CGGGCACAAGAACCCGCGGATGAAGAAGCTGGTCGACACCATCCGCACCGACATCGAGGGCGGTTCCTCGATGTACGAAG
CAGTCAGCAAGCACCCGGTGCAGTTCGACGAGCTGTACCGCAACCTGGTGCGGGCCGGCGAAGGCGCCGGCGTGCTGGAA
ACCGTGCTGGACACGGTGGCCACCTACAAGGAGAACATCGAAGCGCTGAAGGGCAAGATCAAGAAAGCGCTGTTCTACCC
GATCATGGTGGTCGTGGTGGCCATGCTGGTCAGCGGCATCATGCTGGTGTTCGTGGTGCCGCAGTTCGAGGACGTGTTCA
AGAGCTTCGGCGCCGAGCTGCCCGCCTTCACCCAGCTGGTGGTGAACCTCTCAAGATTCATGGTGTCGTGGTGGTGGCTG
ATGCTGCTGGTCGCGATCGGTACAGCGGTCGCTCTGGTCATGTCCTACAAGCGCTCGCCGAAGATGCAGCATGCAATGGA
CCGGTTCGTGCTGAAGGTGCCGGTGATCGGGCAGATCATGCACAACAGTGCCATCGCCCGCTTCTCGCGCACCACCGCGG
TGACCTTCAAGGCCGGCGTGCCGCTGGTGGAGGCGTTGGGCATCGTGGCCGGCGCCACCGGCAATACCGTGTACGAAGAG
GCGGTGCTGCGCATGCGCGACGACGTCTCGGTGGGTTACCCGGTGAACATGTCGATGAAGCAGACCAACCTGTTCCCGCA
CATGGTCATCCAGATGACCGGCATCGGCGAAGAGGCCGGTGCGCTGGACGCCATGCTGTTCAAGGTGGCCGAGTACTATG
AGCAGGAGGTCAACAATTCGGTGGATGCCCTGAGCAGCCTGCTGGAGCCGATGATCATGGTGTTCATTGGTACCATTGTG
GGCGGCATGGTGATTGCCATGTACCTTCCCATCTTCAAACTCGGCGCCGTCGTCGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.798

94.511

0.518
  pilC Acinetobacter baylyi ADP1

51.597

97.136

0.501
  pilC Legionella pneumophila strain ERS1305867

51.88

95.227

0.494
  pilC Acinetobacter baumannii D1279779

49.631

97.136

0.482
  pilG Neisseria gonorrhoeae MS11

44.888

95.704

0.43
  pilG Neisseria meningitidis 44/76-A

44.638

95.704

0.427
  pilC Vibrio cholerae strain A1552

41.872

96.897

0.406
  pilC Vibrio campbellii strain DS40M4

41.397

95.704

0.396
  pilC Thermus thermophilus HB27

37.811

95.943

0.363