Detailed information NTG0793255

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: PWE35_RS16465
• Genome accession: NZ_CP118547
• Coordinates: 3537392..3538765 (+)
• Length: 457 a.a.
• NCBI ID: WP_005410795.1
• Uniprot ID: A0A854E393
• Organism: Stenotrophomonas maltophilia strain HT2
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 3532392..3543765

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PWE35_RS16450 (PWE35_16450)	sucD	3533294..3534169 (-)	876	WP_005410793.1	succinate--CoA ligase subunit alpha	-
PWE35_RS16455 (PWE35_16455)	sucC	3534191..3535360 (-)	1170	WP_004154430.1	ADP-forming succinate--CoA ligase subunit beta	-
PWE35_RS16460 (PWE35_16460)	-	3535718..3537331 (+)	1614	WP_005414304.1	ATP-binding protein	-
PWE35_RS16465 (PWE35_16465)	pilR	3537392..3538765 (+)	1374	WP_005410795.1	sigma-54 dependent transcriptional regulator	Regulator
PWE35_RS16470 (PWE35_16470)	pilB	3538892..3540625 (-)	1734	WP_005414305.1	type IV-A pilus assembly ATPase PilB	Machinery gene
PWE35_RS16475 (PWE35_16475)	pilA/pilAI	3540849..3541256 (-)	408	WP_024956772.1	pilin	Machinery gene
PWE35_RS16480 (PWE35_16480)	-	3541409..3541846 (-)	438	WP_024956771.1	pilin	-
PWE35_RS16485 (PWE35_16485)	pilC	3542199..3543458 (+)	1260	WP_049452341.1	type II secretion system F family protein	Machinery gene

Sequence

Protein

• Length: 457 a.a.
• Molecular weight: 49515.76 Da
• Isoelectric Point: 6.4407

>NTDB_id=793255 PWE35_RS16465 WP_005410795.1 3537392..3538765(+) (pilR) [Stenotrophomonas maltophilia strain HT2]
MNETRSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCITDMRLPDGNGIELVSEIAQHYPRTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNAERPAPGPNAEQGGRLLGHSQAMDVLRTTIGKVARS
QAPVYILGESGVGKELVARTIHAQGARAAGPFVPVNCGAIPGELMESEFFGHRKGSFSGAHADKPGLFQAAHGGTLFLDE
VAELPLQMQVKLLRAIQEKSVRAVGAANEEPVDVRILSATHKDLAELVEDGRFRHDLYYRINVIELKVPPLRERRQDLPE
LAAAVLARLARSHGRATPLLAPSALEALAQYAFPGNVRELENILERALALAEEDCIGADDLRLPQHAPRAPGSAAPAEAV
ADLQPGSAALPSYIEQLERSAIQRALEENRWNKTRTAAQLGITFRALRYKLKKLGME

Nucleotide

• Length: 1374 bp

>NTDB_id=793255 PWE35_RS16465 WP_005410795.1 3537392..3538765(+) (pilR) [Stenotrophomonas maltophilia strain HT2]
ATGAATGAAACCCGCAGCGCCCTCGTCGTCGACGACGAACGCGACATCCGCGAACTGCTGGTGCTGACCCTCGGCCGCAT
GGGGCTGCGCATCAGTACCGCCGCCAACCTGGCCGAGGCACGTGAGCTGCTGGCCAGCAATCCGTACGACCTGTGCATCA
CCGACATGCGCCTGCCCGATGGCAACGGCATCGAACTGGTCAGCGAGATCGCCCAGCACTACCCGCGCACGCCGGTGGCG
ATGATCACCGCATTCGGCAGCATGGATCTCGCCGTGGAGGCACTGAAGGCCGGTGCGTTCGATTTCGTCAGCAAGCCGGT
GGACATCTCGGTGCTGCGCGGACTGGTCAAGCACGCGCTGGAACTCAACAACGCCGAGCGCCCCGCACCGGGCCCCAACG
CCGAACAGGGCGGGCGCCTGCTGGGCCACTCGCAGGCCATGGATGTGCTGCGCACCACCATCGGCAAGGTCGCGCGCAGC
CAGGCGCCGGTCTACATCCTCGGCGAGTCGGGCGTCGGCAAGGAGCTGGTTGCACGCACCATCCATGCCCAAGGCGCGCG
CGCGGCCGGCCCGTTCGTGCCGGTCAACTGCGGTGCCATTCCCGGCGAGCTGATGGAGAGCGAATTCTTCGGCCATCGCA
AGGGCAGTTTCAGCGGCGCGCACGCCGACAAGCCCGGCCTGTTCCAGGCTGCGCACGGCGGCACCCTGTTCCTGGACGAA
GTGGCTGAACTGCCACTGCAGATGCAGGTGAAGCTGCTGCGCGCGATCCAGGAAAAGTCGGTGCGCGCGGTGGGCGCGGC
CAACGAGGAGCCGGTGGATGTCCGCATTCTCTCGGCCACCCACAAGGATCTGGCCGAGCTGGTCGAGGACGGGCGCTTCC
GCCACGACCTGTACTACCGCATCAACGTGATCGAACTGAAGGTGCCGCCGCTGCGCGAGCGCCGCCAGGACCTGCCCGAA
CTGGCCGCGGCCGTGCTGGCCCGATTGGCCCGCAGCCACGGCCGCGCCACCCCGCTGCTGGCGCCGTCGGCGCTGGAAGC
ACTGGCGCAGTACGCGTTCCCGGGCAATGTGCGCGAGCTGGAAAACATCCTGGAGCGTGCGCTGGCCCTGGCCGAGGAAG
ACTGCATCGGCGCCGATGACCTGCGCCTGCCGCAGCACGCGCCGCGTGCACCCGGCAGTGCGGCGCCCGCCGAAGCGGTG
GCCGACCTGCAGCCGGGCAGCGCTGCCCTGCCCTCCTACATCGAGCAGCTCGAGCGCAGCGCCATCCAGCGTGCGCTGGA
AGAGAACCGCTGGAACAAGACCCGTACCGCCGCGCAGCTGGGCATCACCTTCCGTGCGCTGCGCTACAAGCTGAAGAAGC
TGGGGATGGAGTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (414-454)

• Response regulator receiver domain (Response_reg) (8-115)

• Sigma-54 interaction domain (Sigma54_activat) (140-306)

3D structure

• AlphaFold DB: A0A854E393

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	63.656	99.344	0.632
pilR	Acinetobacter baumannii strain A118	48.38	100	0.49
luxO	Vibrio cholerae strain A1552	37.079	97.374	0.361