Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | PVK54_RS04860 | Genome accession | NZ_CP118312 |
| Coordinates | 911694..912086 (+) | Length | 130 a.a. |
| NCBI ID | WP_397611477.1 | Uniprot ID | - |
| Organism | Streptococcus pyogenes strain 20181688 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 906694..917086
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PVK54_RS04805 (PVK54_04760) | - | 906766..907023 (+) | 258 | WP_022554795.1 | hypothetical protein | - |
| PVK54_RS04810 (PVK54_04765) | - | 907097..907324 (+) | 228 | WP_397611461.1 | hypothetical protein | - |
| PVK54_RS04815 (PVK54_04770) | - | 907318..908229 (+) | 912 | WP_397611463.1 | DnaD domain protein | - |
| PVK54_RS04820 (PVK54_04775) | - | 908265..908492 (+) | 228 | WP_397611465.1 | hypothetical protein | - |
| PVK54_RS04825 (PVK54_04780) | - | 908492..908866 (+) | 375 | WP_397611467.1 | YopX family protein | - |
| PVK54_RS04830 (PVK54_04785) | - | 908863..909147 (+) | 285 | WP_397611468.1 | hypothetical protein | - |
| PVK54_RS04835 (PVK54_04790) | - | 909150..909485 (+) | 336 | WP_011054813.1 | hypothetical protein | - |
| PVK54_RS04840 (PVK54_04795) | - | 909488..909970 (+) | 483 | WP_136019356.1 | class I SAM-dependent methyltransferase | - |
| PVK54_RS04845 (PVK54_04800) | - | 909960..910724 (+) | 765 | WP_397611471.1 | DNA-methyltransferase | - |
| PVK54_RS04850 (PVK54_04805) | - | 910772..911371 (+) | 600 | WP_397611473.1 | DUF1642 domain-containing protein | - |
| PVK54_RS04855 (PVK54_04810) | - | 911368..911535 (+) | 168 | WP_397611475.1 | hypothetical protein | - |
| PVK54_RS04860 (PVK54_04815) | ssbA | 911694..912086 (+) | 393 | WP_397611477.1 | single-stranded DNA-binding protein | Machinery gene |
| PVK54_RS04865 (PVK54_04820) | - | 912101..912382 (+) | 282 | WP_397611479.1 | hypothetical protein | - |
| PVK54_RS04870 (PVK54_04825) | - | 912379..912717 (+) | 339 | WP_371935506.1 | helix-turn-helix domain-containing protein | - |
| PVK54_RS04875 (PVK54_04830) | - | 912720..913547 (+) | 828 | WP_011017372.1 | prohibitin family protein | - |
| PVK54_RS04880 (PVK54_04835) | - | 913562..913963 (+) | 402 | WP_155961725.1 | transcriptional regulator | - |
| PVK54_RS04885 (PVK54_04840) | - | 914123..914698 (+) | 576 | WP_011054435.1 | site-specific integrase | - |
| PVK54_RS04890 (PVK54_04845) | - | 914850..915272 (+) | 423 | WP_397611482.1 | hypothetical protein | - |
| PVK54_RS04895 (PVK54_04850) | - | 915253..915639 (+) | 387 | WP_243096355.1 | hypothetical protein | - |
| PVK54_RS04900 (PVK54_04855) | - | 915632..915937 (+) | 306 | WP_397611484.1 | HNH endonuclease | - |
| PVK54_RS04905 (PVK54_04860) | - | 916077..916394 (+) | 318 | WP_011017379.1 | P27 family phage terminase small subunit | - |
Sequence
Protein
Download Length: 130 a.a. Molecular weight: 14836.75 Da Isoelectric Point: 5.8648
>NTDB_id=791803 PVK54_RS04860 WP_397611477.1 911694..912086(+) (ssbA) [Streptococcus pyogenes strain 20181688]
MINNVVLIGRLIKDVELRYTPSQVACAQFTLAVNRNFKNQDGQKEADFINCVMWRQAAENLTNWTKKGHLIAITGRIQTR
NYENQQGQRIYVTEVVAESFQILEKRDNTANTSSLADSMPDYGPEPDLPF
MINNVVLIGRLIKDVELRYTPSQVACAQFTLAVNRNFKNQDGQKEADFINCVMWRQAAENLTNWTKKGHLIAITGRIQTR
NYENQQGQRIYVTEVVAESFQILEKRDNTANTSSLADSMPDYGPEPDLPF
Nucleotide
Download Length: 393 bp
>NTDB_id=791803 PVK54_RS04860 WP_397611477.1 911694..912086(+) (ssbA) [Streptococcus pyogenes strain 20181688]
ATGATCAATAACGTTGTCTTGATTGGCCGCTTAATAAAAGATGTTGAGCTACGCTATACACCAAGTCAAGTAGCTTGCGC
ACAGTTTACTTTAGCAGTTAATCGTAATTTTAAAAATCAAGATGGGCAAAAAGAAGCTGATTTTATTAATTGTGTGATGT
GGCGACAAGCTGCTGAAAATTTAACAAATTGGACTAAGAAGGGCCATCTTATTGCGATAACAGGACGCATACAGACCCGT
AATTATGAAAACCAGCAAGGACAACGTATCTATGTTACGGAAGTTGTCGCAGAAAGCTTCCAGATTTTGGAGAAGCGTGA
TAACACTGCAAACACAAGCAGTTTAGCTGATAGCATGCCAGACTATGGACCAGAACCAGATTTACCATTTTAG
ATGATCAATAACGTTGTCTTGATTGGCCGCTTAATAAAAGATGTTGAGCTACGCTATACACCAAGTCAAGTAGCTTGCGC
ACAGTTTACTTTAGCAGTTAATCGTAATTTTAAAAATCAAGATGGGCAAAAAGAAGCTGATTTTATTAATTGTGTGATGT
GGCGACAAGCTGCTGAAAATTTAACAAATTGGACTAAGAAGGGCCATCTTATTGCGATAACAGGACGCATACAGACCCGT
AATTATGAAAACCAGCAAGGACAACGTATCTATGTTACGGAAGTTGTCGCAGAAAGCTTCCAGATTTTGGAGAAGCGTGA
TAACACTGCAAACACAAGCAGTTTAGCTGATAGCATGCCAGACTATGGACCAGAACCAGATTTACCATTTTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
66.355 |
82.308 |
0.546 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
63.303 |
83.846 |
0.531 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
45.926 |
100 |
0.477 |
| ssbA | Streptococcus mutans UA159 |
43.704 |
100 |
0.454 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
43.382 |
100 |
0.454 |
| ssbB/cilA | Streptococcus mitis SK321 |
42.647 |
100 |
0.446 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
42.647 |
100 |
0.446 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
42.647 |
100 |
0.446 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
42.647 |
100 |
0.446 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
42.647 |
100 |
0.446 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
50.943 |
81.538 |
0.415 |
| ssbB | Lactococcus lactis subsp. cremoris KW2 |
39.535 |
99.231 |
0.392 |