Detailed information NTG0786303

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: PSP57_RS26765
• Genome accession: NZ_CP117527
• Coordinates: 5685722..5686174 (-)
• Length: 150 a.a.
• NCBI ID: WP_031636800.1
• Uniprot ID: P17837
• Organism: Pseudomonas aeruginosa strain MF1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IS/Tn	5684269..5685480	5685722..5686174	flank	242

Gene organization within MGE regions

Location: 5684269..5686174

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PSP57_RS26765 (PSP57_26765)	pilA	5685722..5686174 (-)	453	WP_031636800.1	pilin	Machinery gene

Sequence

Protein

• Length: 150 a.a.
• Molecular weight: 15743.11 Da
• Isoelectric Point: 8.4742

>NTDB_id=786303 PSP57_RS26765 WP_031636800.1 5685722..5686174(-) (pilA) [Pseudomonas aeruginosa strain MF1]
MKAQKGFTLIELMIVVAIIGILAAIAIPQYQNYVARSEGASALATINPLKTTVEESLSRGIAGSKILIGTTASTADTTYV
GIDEKANKLGTVAVTIKDTGDGTVKFTFATGQSSPKNAGKEITLNRTAEGVWTCTSTQEEMFIPKGCNKP

Nucleotide

• Length: 453 bp

>NTDB_id=786303 PSP57_RS26765 WP_031636800.1 5685722..5686174(-) (pilA) [Pseudomonas aeruginosa strain MF1]
ATGAAAGCTCAAAAAGGCTTTACCTTGATCGAGCTGATGATCGTGGTTGCGATCATCGGTATCCTGGCGGCGATTGCCAT
TCCCCAGTACCAGAACTATGTGGCGCGTTCGGAAGGCGCTTCGGCGCTGGCGACGATCAACCCGTTGAAGACCACTGTTG
AAGAGTCGCTGTCGCGTGGAATTGCTGGTAGCAAAATTCTGATCGGTACTACAGCTTCTACTGCAGATACCACCTATGTA
GGTATTGATGAGAAGGCAAATAAACTTGGTACCGTAGCTGTAACTATTAAAGACACAGGCGATGGTACTGTAAAATTTAC
TTTTGCAACTGGTCAGTCCAGTCCGAAGAATGCGGGCAAGGAAATTACTTTGAATCGTACTGCTGAAGGTGTATGGACTT
GCACCTCTACTCAGGAAGAGATGTTTATTCCTAAGGGTTGTAATAAGCCTTAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (1-26)

• Pilin (bacterial filament) (Pilin) (35-148)

3D structure

• AlphaFold DB: P17837

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Pseudomonas aeruginosa PAK	66.447	100	0.673
pilA	Vibrio cholerae O1 biovar El Tor strain E7946	45	100	0.48
pilA	Vibrio cholerae strain A1552	45	100	0.48
pilA	Vibrio cholerae C6706	45	100	0.48
pilA/pilAI	Pseudomonas stutzeri DSM 10701	46	100	0.46
pilA	Acinetobacter baumannii strain A118	45.27	98.667	0.447
pilA	Vibrio parahaemolyticus RIMD 2210633	42.568	98.667	0.42
pilA/pilAII	Pseudomonas stutzeri DSM 10701	43.357	95.333	0.413
comP	Acinetobacter baylyi ADP1	41.333	100	0.413
pilA/pilA1	Eikenella corrodens VA1	39.865	98.667	0.393
pilA2	Legionella pneumophila str. Paris	38.255	99.333	0.38
pilA2	Legionella pneumophila strain ERS1305867	38.255	99.333	0.38