Detailed information NTG0785502

Bioinformatically predicted

Overview

• Name: pilU
• Type: Machinery gene
• Locus tag: PSH72_RS16945
• Genome accession: NZ_CP117453
• Coordinates: 3764825..3765934 (-)
• Length: 369 a.a.
• NCBI ID: WP_305502176.1
• Uniprot ID: -
• Organism: Pseudomonas cucumis strain FP1962
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3759825..3770934

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PSH72_RS16940 (PSH72_16935)	-	3760741..3764520 (-)	3780	WP_305502175.1	hypothetical protein	-
PSH72_RS16945 (PSH72_16940)	pilU	3764825..3765934 (-)	1110	WP_305502176.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
PSH72_RS16950 (PSH72_16945)	-	3766054..3768591 (+)	2538	WP_305502177.1	PAS domain S-box protein	-
PSH72_RS16955 (PSH72_16950)	-	3768658..3768933 (+)	276	WP_007898282.1	peptidylprolyl isomerase	-
PSH72_RS16960 (PSH72_16955)	-	3769005..3769937 (-)	933	WP_305502179.1	sugar kinase	-

Sequence

Protein

• Length: 369 a.a.
• Molecular weight: 40851.74 Da
• Isoelectric Point: 6.8355

>NTDB_id=785502 PSH72_RS16945 WP_305502176.1 3764825..3765934(-) (pilU) [Pseudomonas cucumis strain FP1962]
MEIDALLQTLASRNGSDLYLSTGAPPSAKFDGVLKSLTEQPFKPGEVAAIAASIMDAEQRLEFDRELEMNLALSLPGVGR
FRLNIFKQRNDVSIVARNIKLDIPRFEDLKLPPVLLETVMLKQGLILFVGSTGSGKSTSLAALIDYRNRHSSGHIITIED
PVEFIHRHKKSIINQREVGVDTRSFHAALKNTLRQAPDVVLIGEIRDRETMEHALAFADTGHLVISTLHAHNANQALDRV
INFFPEERRTQLLHDLGNNLKAFVSQRLVRTRDGQRRAAVEVMLGTPTIGDLIRRNEFGELKGIMEKSSEAGMQTFDGAL
FALFAEGAIDEAQALKHADSVNNLRLRLKMHAEATPGPHTPPGEWGLVD

Nucleotide

• Length: 1110 bp

>NTDB_id=785502 PSH72_RS16945 WP_305502176.1 3764825..3765934(-) (pilU) [Pseudomonas cucumis strain FP1962]
ATGGAAATCGATGCACTGTTGCAAACTCTGGCCAGCCGCAATGGCTCCGATCTCTACCTGTCCACGGGCGCGCCACCCAG
CGCGAAATTTGACGGTGTGCTCAAATCCCTGACCGAGCAACCGTTCAAACCGGGTGAAGTCGCGGCTATTGCCGCGTCCA
TCATGGACGCCGAACAGCGCCTGGAGTTCGATCGCGAACTGGAAATGAATCTGGCGCTTTCCCTGCCGGGGGTCGGACGC
TTTCGGCTCAATATCTTCAAGCAGCGTAACGATGTGTCCATCGTGGCGCGCAACATCAAGCTCGACATTCCACGCTTCGA
AGACCTCAAGCTGCCACCGGTGCTGCTCGAAACGGTGATGCTCAAGCAGGGGCTGATATTGTTCGTCGGTTCGACCGGTT
CCGGCAAGTCGACCTCGCTGGCGGCACTGATCGATTACCGCAACCGCCACAGCAGCGGCCATATCATCACCATCGAAGAC
CCGGTCGAGTTTATCCATCGGCACAAGAAGTCGATCATCAACCAGCGTGAAGTCGGCGTAGACACCCGCAGCTTTCATGC
AGCGTTGAAAAACACCCTGCGCCAGGCGCCGGACGTGGTGCTGATCGGCGAGATCCGCGACCGCGAGACTATGGAGCACG
CGCTGGCGTTTGCCGATACCGGCCATCTGGTAATTTCCACGTTGCATGCCCACAACGCCAATCAGGCGCTGGACCGCGTG
ATCAACTTCTTCCCCGAAGAACGCCGGACGCAACTGCTCCATGACCTGGGCAATAACCTCAAGGCCTTTGTTTCCCAGCG
TTTGGTGCGTACCCGCGATGGGCAGCGCCGGGCGGCGGTGGAGGTGATGCTGGGAACGCCGACCATCGGCGACCTGATCA
GGCGCAATGAGTTTGGCGAGCTCAAGGGAATCATGGAGAAATCTTCAGAGGCGGGGATGCAGACGTTTGATGGGGCGCTG
TTCGCGCTGTTTGCCGAGGGCGCGATTGATGAGGCGCAGGCGCTGAAACATGCGGACTCGGTGAACAACTTGCGACTGCG
CCTGAAAATGCACGCCGAGGCCACGCCGGGGCCCCATACCCCGCCGGGAGAATGGGGATTAGTGGACTGA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (116-271)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilU	Pseudomonas stutzeri DSM 10701	54.62	99.729	0.545
pilU	Acinetobacter baylyi ADP1	53.09	96.477	0.512
pilU	Vibrio cholerae strain A1552	50.571	94.851	0.48
pilT	Pseudomonas stutzeri DSM 10701	40.698	93.225	0.379
pilT	Pseudomonas aeruginosa PAK	40.407	93.225	0.377
pilT	Vibrio cholerae O1 biovar El Tor strain E7946	42.121	89.431	0.377
pilT	Vibrio cholerae strain A1552	42.121	89.431	0.377
pilT	Legionella pneumophila strain ERS1305867	40.12	90.515	0.363
pilT	Legionella pneumophila strain Lp02	40.12	90.515	0.363
pilT	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	39.528	91.87	0.363
pilT	Acinetobacter baumannii D1279779	39.82	90.515	0.36
pilT	Acinetobacter baumannii strain A118	39.82	90.515	0.36