NTDB

Overview

Name	comGC	Type	Machinery gene
Locus tag	IL310_RS02875	Genome accession	NZ_CP117409
Coordinates	175726..176109 (+)	Length	127 a.a.
NCBI ID	WP_012898622.1	Uniprot ID	-
Organism	Lactococcus lactis strain LB7
Function	dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 170726..181109

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IL310_RS02865 (IL310_02870)	comGA	173807..174745 (+)	939	WP_058206479.1	competence type IV pilus ATPase ComGA	Machinery gene
IL310_RS02870 (IL310_02875)	comGB	174639..175712 (+)	1074	WP_201248649.1	competence type IV pilus assembly protein ComGB	Machinery gene
IL310_RS02875 (IL310_02880)	comGC	175726..176109 (+)	384	WP_012898622.1	competence type IV pilus major pilin ComGC	Machinery gene
IL310_RS02880 (IL310_02885)	comGD	176069..176500 (+)	432	WP_012898621.1	competence type IV pilus minor pilin ComGD	Machinery gene
IL310_RS02885 (IL310_02890)	comGE	176472..176768 (+)	297	WP_033900709.1	competence type IV pilus minor pilin ComGE	Machinery gene
IL310_RS02890 (IL310_02895)	comGF	176731..177177 (+)	447	WP_201248646.1	competence type IV pilus minor pilin ComGF	Machinery gene
IL310_RS02895 (IL310_02900)	comGG	177216..177500 (+)	285	WP_025017139.1	competence type IV pilus minor pilin ComGG	Machinery gene
IL310_RS02900 (IL310_02905)	-	177582..178019 (+)	438	WP_201248645.1	zinc-dependent MarR family transcriptional regulator	-
IL310_RS02905 (IL310_02910)	-	178016..178858 (+)	843	WP_015427160.1	metal ABC transporter substrate-binding protein	-
IL310_RS02910 (IL310_02915)	-	179035..179772 (+)	738	WP_201248644.1	metal ABC transporter ATP-binding protein	-
IL310_RS02915 (IL310_02920)	-	179765..180574 (+)	810	WP_014570791.1	metal ABC transporter permease	-

Sequence

Protein

Download Length: 127 a.a. Molecular weight: 14825.41 Da Isoelectric Point: 8.4563

                                >NTDB_id=784619 IL310_RS02875 WP_012898622.1 175726..176109(+) (comGC) [Lactococcus lactis strain LB7]

MERTKKFILKKIQKIFLFVKICEKKCRQKELRAFTLIEMLIVLAIISILILLFVPNLIKEKSQVQKTGEAAVVKVVESQA

QLYELDHDDEKPSLSELLSAGMITQKQISAYDNYYDQNKNEERNFND

Nucleotide

Download Length: 384 bp

                                >NTDB_id=784619 IL310_RS02875 WP_012898622.1 175726..176109(+) (comGC) [Lactococcus lactis strain LB7]

ATGGAAAGAACTAAGAAGTTTATTTTAAAAAAAATACAAAAAATATTTTTATTCGTTAAAATTTGTGAAAAAAAATGCCG

TCAGAAAGAGCTAAGAGCTTTTACTTTGATAGAGATGTTAATTGTACTAGCTATTATTAGTATTTTGATATTACTATTTG

TTCCAAATTTAATTAAAGAAAAATCACAAGTTCAAAAAACTGGAGAAGCGGCAGTTGTAAAAGTAGTAGAAAGTCAAGCT

CAACTTTATGAATTAGATCATGATGATGAGAAGCCGAGTCTGTCAGAATTGCTCAGCGCTGGGATGATTACTCAAAAACA

AATTTCTGCTTACGATAATTACTATGATCAGAATAAAAATGAAGAACGAAATTTTAATGACTAG

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(32-52)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
comGC	Lactococcus lactis subsp. cremoris KW2	80.172	91.339	0.732
comYC	Streptococcus mutans UA159	56.436	79.528	0.449
comYC	Streptococcus mutans UA140	56.436	79.528	0.449
comGC/cglC	Streptococcus mitis SK321	55.446	79.528	0.441
comYC	Streptococcus gordonii str. Challis substr. CH1	55.556	77.953	0.433
comGC/cglC	Streptococcus pneumoniae TIGR4	53.465	79.528	0.425
comGC/cglC	Streptococcus pneumoniae Rx1	53.465	79.528	0.425
comGC/cglC	Streptococcus pneumoniae D39	53.465	79.528	0.425
comGC/cglC	Streptococcus pneumoniae R6	53.465	79.528	0.425
comGC/cglC	Streptococcus mitis NCTC 12261	57.303	70.079	0.402
comYC	Streptococcus suis isolate S10	55.682	69.291	0.386

Detailed information NTG0784619