Detailed information NTG0784622

Bioinformatically predicted

Overview

• Name: comGF
• Type: Machinery gene
• Locus tag: IL310_RS02890
• Genome accession: NZ_CP117409
• Coordinates: 176731..177177 (+)
• Length: 148 a.a.
• NCBI ID: WP_201248646.1
• Uniprot ID: -
• Organism: Lactococcus lactis strain LB7
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 171731..182177

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IL310_RS02865 (IL310_02870)	comGA	173807..174745 (+)	939	WP_058206479.1	competence type IV pilus ATPase ComGA	Machinery gene
IL310_RS02870 (IL310_02875)	comGB	174639..175712 (+)	1074	WP_201248649.1	competence type IV pilus assembly protein ComGB	Machinery gene
IL310_RS02875 (IL310_02880)	comGC	175726..176109 (+)	384	WP_012898622.1	competence type IV pilus major pilin ComGC	Machinery gene
IL310_RS02880 (IL310_02885)	comGD	176069..176500 (+)	432	WP_012898621.1	competence type IV pilus minor pilin ComGD	Machinery gene
IL310_RS02885 (IL310_02890)	comGE	176472..176768 (+)	297	WP_033900709.1	competence type IV pilus minor pilin ComGE	Machinery gene
IL310_RS02890 (IL310_02895)	comGF	176731..177177 (+)	447	WP_201248646.1	competence type IV pilus minor pilin ComGF	Machinery gene
IL310_RS02895 (IL310_02900)	comGG	177216..177500 (+)	285	WP_025017139.1	competence type IV pilus minor pilin ComGG	Machinery gene
IL310_RS02900 (IL310_02905)	-	177582..178019 (+)	438	WP_201248645.1	zinc-dependent MarR family transcriptional regulator	-
IL310_RS02905 (IL310_02910)	-	178016..178858 (+)	843	WP_015427160.1	metal ABC transporter substrate-binding protein	-
IL310_RS02910 (IL310_02915)	-	179035..179772 (+)	738	WP_201248644.1	metal ABC transporter ATP-binding protein	-
IL310_RS02915 (IL310_02920)	-	179765..180574 (+)	810	WP_014570791.1	metal ABC transporter permease	-
IL310_RS02920 (IL310_02925)	-	180612..181478 (-)	867	WP_025017140.1	RluA family pseudouridine synthase	-
IL310_RS02925 (IL310_02930)	-	181683..182060 (+)	378	WP_003129983.1	pyridoxamine 5'-phosphate oxidase family protein	-

Sequence

Protein

• Length: 148 a.a.
• Molecular weight: 17038.86 Da
• Isoelectric Point: 9.4308

>NTDB_id=784622 IL310_RS02890 WP_201248646.1 176731..177177(+) (comGF) [Lactococcus lactis strain LB7]
MGRKLCNLNFKVKAFTLLECLVALLAISGSVLVISGLTKMLKEQVAISQSDSIKDWQIFCQQMRFELSGTKLDRVEQNFL
YVTKDKKLRFGFMSDDFRKTDDKGQGYQPMLYDIKAAKIQATKNLITIRIDFNQGGERTFIYQFPEDT

Nucleotide

• Length: 447 bp

>NTDB_id=784622 IL310_RS02890 WP_201248646.1 176731..177177(+) (comGF) [Lactococcus lactis strain LB7]
ATGGGAAGGAAATTATGCAACTTGAACTTCAAAGTTAAAGCATTTACCTTGTTGGAGTGTTTGGTGGCACTTCTTGCAAT
TTCTGGTTCAGTCCTTGTCATCTCAGGTTTAACAAAGATGTTGAAAGAACAAGTGGCGATTAGTCAAAGTGATAGCATAA
AAGATTGGCAAATTTTCTGTCAGCAAATGCGTTTTGAACTCTCAGGAACAAAATTAGATAGGGTAGAACAGAATTTTCTG
TATGTAACTAAAGATAAAAAACTAAGGTTTGGTTTTATGAGTGATGATTTCCGGAAGACTGATGACAAAGGTCAGGGTTA
TCAGCCAATGCTTTATGATATAAAAGCGGCTAAGATTCAAGCTACTAAAAATTTAATAACCATAAGAATTGATTTTAATC
AAGGAGGTGAAAGAACATTTATTTATCAATTTCCAGAAGATACGTAA

Domains

Predicted by InterproScan.

• Putative Competence protein ComGF (ComGF) (48-137)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comGF	Lactococcus lactis subsp. cremoris KW2	76.259	93.919	0.716
comYF	Streptococcus mutans UA140	48.227	95.27	0.459
comYF	Streptococcus mutans UA159	47.518	95.27	0.453
comGF/cglF	Streptococcus mitis SK321	43.066	92.568	0.399
comGF/cglF	Streptococcus pneumoniae Rx1	40.426	95.27	0.385
comGF/cglF	Streptococcus pneumoniae D39	40.426	95.27	0.385
comGF/cglF	Streptococcus pneumoniae R6	40.426	95.27	0.385
comGF/cglF	Streptococcus pneumoniae TIGR4	40.426	95.27	0.385
comGF/cglF	Streptococcus mitis NCTC 12261	41.606	92.568	0.385