Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   LYZ37_RS02190 Genome accession   NZ_CP117029
Coordinates   448920..449324 (-) Length   134 a.a.
NCBI ID   WP_272786279.1    Uniprot ID   -
Organism   Vibrio tubiashii strain FP17     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 443920..454324
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LYZ37_RS02170 (LYZ37_02170) coaE 444457..445065 (-) 609 WP_272786276.1 dephospho-CoA kinase -
  LYZ37_RS02175 (LYZ37_02175) pilD 445067..445936 (-) 870 WP_272786277.1 prepilin peptidase Machinery gene
  LYZ37_RS02180 (LYZ37_02180) pilC 445995..447218 (-) 1224 WP_272786278.1 type II secretion system F family protein Machinery gene
  LYZ37_RS02185 (LYZ37_02185) pilB 447229..448920 (-) 1692 WP_272787133.1 type IV-A pilus assembly ATPase PilB Machinery gene
  LYZ37_RS02190 (LYZ37_02190) pilA 448920..449324 (-) 405 WP_272786279.1 pilin Machinery gene
  LYZ37_RS02195 (LYZ37_02195) nadC 449566..450453 (-) 888 WP_272786280.1 carboxylating nicotinate-nucleotide diphosphorylase -
  LYZ37_RS02200 (LYZ37_02200) ampD 450585..451130 (+) 546 WP_272786281.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  LYZ37_RS02205 (LYZ37_02205) fldB 451311..451832 (-) 522 WP_272786282.1 flavodoxin FldB -
  LYZ37_RS02210 (LYZ37_02210) xerD 451996..452892 (+) 897 WP_004742607.1 site-specific tyrosine recombinase XerD -
  LYZ37_RS02215 (LYZ37_02215) - 452933..453685 (+) 753 WP_272786283.1 thioredoxin fold domain-containing protein -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 13718.71 Da        Isoelectric Point: 9.0976

>NTDB_id=782102 LYZ37_RS02190 WP_272786279.1 448920..449324(-) (pilA) [Vibrio tubiashii strain FP17]
MQSLQSRKTKGFTLIELMIVVAVIGVLAAIAVPQYQNYVKKGALGSALASATAYKTIVEDSIAIDGTFPSISQAFAIGTI
NATSGAIATGTDTNDIVASITQGSGKGQTVTLKRNAKGEWNCTLSSTVTISGCS

Nucleotide


Download         Length: 405 bp        

>NTDB_id=782102 LYZ37_RS02190 WP_272786279.1 448920..449324(-) (pilA) [Vibrio tubiashii strain FP17]
ATGCAAAGTTTACAAAGCCGCAAAACCAAAGGCTTTACCTTAATTGAGTTGATGATTGTGGTTGCCGTAATTGGCGTTCT
AGCAGCAATTGCAGTGCCTCAATATCAAAACTACGTAAAAAAAGGAGCATTAGGCTCAGCGTTAGCATCGGCTACTGCCT
ATAAAACAATTGTTGAAGACTCCATTGCCATTGACGGCACTTTTCCGAGCATTTCACAGGCTTTTGCTATTGGCACTATT
AACGCAACTTCAGGTGCAATTGCTACAGGGACTGATACTAATGATATAGTTGCGTCAATTACTCAAGGCTCAGGTAAAGG
CCAAACTGTAACGCTTAAGCGCAATGCCAAGGGAGAATGGAATTGTACCCTCTCCTCGACGGTAACAATATCTGGTTGCT
CATAG

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(7-31)

Pilin (bacterial filament) (Pilin)

(45-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Vibrio cholerae O1 biovar El Tor strain E7946

44.898

100

0.493
  pilA Vibrio cholerae strain A1552

44.898

100

0.493
  pilA Vibrio cholerae C6706

44.898

100

0.493
  pilA Pseudomonas aeruginosa PAK

42.759

100

0.463
  pilA/pilAI Pseudomonas stutzeri DSM 10701

40

100

0.418
  pilA Vibrio parahaemolyticus RIMD 2210633

38.194

100

0.41
  pilA/pilAII Pseudomonas stutzeri DSM 10701

40

97.015

0.388
  pilA Acinetobacter baumannii strain A118

40.157

94.776

0.381
  comP Acinetobacter baylyi ADP1

36.765

100

0.373