Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   LYZ37_RS02180 Genome accession   NZ_CP117029
Coordinates   445995..447218 (-) Length   407 a.a.
NCBI ID   WP_272786278.1    Uniprot ID   -
Organism   Vibrio tubiashii strain FP17     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 440995..452218
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LYZ37_RS02140 (LYZ37_02140) rpsP 441060..441308 (+) 249 WP_004742593.1 30S ribosomal protein S16 -
  LYZ37_RS02145 (LYZ37_02145) rimM 441338..441886 (+) 549 WP_004742594.1 ribosome maturation factor RimM -
  LYZ37_RS02150 (LYZ37_02150) trmD 441914..442657 (+) 744 WP_004742595.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  LYZ37_RS02155 (LYZ37_02155) rplS 442699..443052 (+) 354 WP_004742596.1 50S ribosomal protein L19 -
  LYZ37_RS02160 (LYZ37_02160) yacG 443425..443619 (-) 195 WP_272786274.1 DNA gyrase inhibitor YacG -
  LYZ37_RS02165 (LYZ37_02165) zapD 443682..444422 (-) 741 WP_272786275.1 cell division protein ZapD -
  LYZ37_RS02170 (LYZ37_02170) coaE 444457..445065 (-) 609 WP_272786276.1 dephospho-CoA kinase -
  LYZ37_RS02175 (LYZ37_02175) pilD 445067..445936 (-) 870 WP_272786277.1 prepilin peptidase Machinery gene
  LYZ37_RS02180 (LYZ37_02180) pilC 445995..447218 (-) 1224 WP_272786278.1 type II secretion system F family protein Machinery gene
  LYZ37_RS02185 (LYZ37_02185) pilB 447229..448920 (-) 1692 WP_272787133.1 type IV-A pilus assembly ATPase PilB Machinery gene
  LYZ37_RS02190 (LYZ37_02190) pilA 448920..449324 (-) 405 WP_272786279.1 pilin Machinery gene
  LYZ37_RS02195 (LYZ37_02195) nadC 449566..450453 (-) 888 WP_272786280.1 carboxylating nicotinate-nucleotide diphosphorylase -
  LYZ37_RS02200 (LYZ37_02200) ampD 450585..451130 (+) 546 WP_272786281.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  LYZ37_RS02205 (LYZ37_02205) fldB 451311..451832 (-) 522 WP_272786282.1 flavodoxin FldB -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 44908.08 Da        Isoelectric Point: 10.3518

>NTDB_id=782100 LYZ37_RS02180 WP_272786278.1 445995..447218(-) (pilC) [Vibrio tubiashii strain FP17]
MKATSHQLKQYRWKGVNQRGKIVSGSTLALSDNEVKDKLSEQSIRVKSLRRKSLSLVTRLTQRVKKKDITLLTRQLSTML
ATGVPLIQALKLITLNHPKAEMRSILSHISKEVESGNPLSQSLGTASPLFDSLYTDLVATGEQSGNLAEVLQRIADYREK
SQRLNAKVTKALIYPTMVMTTAFAVTYLMLTMVIPQFEAMFAGFGAELPWLTQQVLALSAWLQTYSGPSLIGLMLLSGVI
KLGLTKSYRLQLLFSRALLKIPLLGNILTKAAIAKFSRTLATSFNAGIPILEGIRASAKTVRNQHYHQAIKAALLDVTAG
MPLYLSLRNSDCFPEMVLQMIMIGEESGRLGEMLHKIADVYEFEIDNTVDNLGKIIEPTIIIFLGIVVGGLIVAMYLPIF
NLMSVLG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=782100 LYZ37_RS02180 WP_272786278.1 445995..447218(-) (pilC) [Vibrio tubiashii strain FP17]
ATGAAAGCAACATCTCATCAACTCAAACAGTATCGCTGGAAGGGGGTTAACCAGCGAGGAAAGATCGTCTCTGGCTCTAC
GCTGGCCTTAAGTGACAACGAAGTGAAAGATAAACTGAGTGAACAATCGATTCGTGTTAAATCTCTAAGAAGAAAGTCAC
TGTCTCTCGTTACTCGCCTAACACAAAGAGTCAAAAAGAAAGACATCACTCTACTCACGAGGCAGCTGAGTACTATGCTC
GCGACTGGAGTACCTCTTATTCAAGCATTGAAGCTTATTACTCTTAACCACCCCAAAGCTGAGATGAGATCGATCTTAAG
CCACATAAGCAAAGAGGTAGAATCAGGAAACCCGCTCTCTCAGAGCTTAGGCACCGCTAGCCCGCTATTCGATAGCCTTT
ATACCGACCTCGTTGCCACTGGAGAGCAGTCTGGCAACTTAGCGGAAGTACTCCAACGTATTGCTGACTATCGGGAAAAA
TCGCAACGACTTAACGCCAAGGTAACCAAAGCGCTCATCTATCCCACTATGGTGATGACCACGGCTTTCGCTGTGACGTA
TCTAATGCTAACGATGGTGATACCTCAGTTTGAAGCGATGTTTGCAGGCTTTGGTGCTGAGTTACCTTGGCTTACCCAAC
AAGTGCTGGCCTTATCCGCTTGGTTACAAACCTATTCAGGACCTAGCTTAATTGGATTGATGCTGCTATCAGGGGTCATT
AAGCTCGGTTTAACAAAATCATACCGACTTCAATTACTGTTTAGTCGTGCCCTACTCAAGATCCCGCTGCTCGGCAACAT
TTTAACTAAAGCGGCAATTGCTAAATTTAGCCGAACACTTGCCACTAGCTTTAACGCCGGAATCCCAATTCTAGAAGGTA
TAAGAGCCTCCGCTAAAACGGTTCGTAACCAGCATTATCACCAAGCAATCAAAGCGGCTTTGCTCGATGTCACTGCAGGT
ATGCCGCTGTATCTTTCACTGCGCAACTCTGACTGTTTTCCCGAAATGGTTTTGCAGATGATAATGATAGGTGAAGAGTC
AGGTCGGCTCGGAGAAATGCTACACAAAATTGCCGATGTGTATGAGTTTGAGATCGATAATACTGTTGATAACCTTGGTA
AGATCATAGAGCCCACGATAATCATCTTTCTAGGTATTGTTGTCGGTGGTCTGATTGTCGCAATGTATTTACCTATCTTT
AATTTGATGAGTGTCTTAGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(73-195)

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

62.745

100

0.629
  pilC Vibrio campbellii strain DS40M4

59.611

100

0.602
  pilC Pseudomonas stutzeri DSM 10701

41.414

97.297

0.403
  pilC Acinetobacter baylyi ADP1

39.454

99.017

0.391
  pilC Legionella pneumophila strain ERS1305867

38.386

100

0.386
  pilC Acinetobacter baumannii D1279779

37.717

99.017

0.373
  pilG Neisseria gonorrhoeae MS11

39.018

95.086

0.371
  pilG Neisseria meningitidis 44/76-A

38.76

95.086

0.369