Detailed information NTG0782099

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: LYZ37_RS02175
• Genome accession: NZ_CP117029
• Coordinates: 445067..445936 (-)
• Length: 289 a.a.
• NCBI ID: WP_272786277.1
• Uniprot ID: -
• Organism: Vibrio tubiashii strain FP17
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 440067..450936

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LYZ37_RS02140 (LYZ37_02140)	rpsP	441060..441308 (+)	249	WP_004742593.1	30S ribosomal protein S16	-
LYZ37_RS02145 (LYZ37_02145)	rimM	441338..441886 (+)	549	WP_004742594.1	ribosome maturation factor RimM	-
LYZ37_RS02150 (LYZ37_02150)	trmD	441914..442657 (+)	744	WP_004742595.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
LYZ37_RS02155 (LYZ37_02155)	rplS	442699..443052 (+)	354	WP_004742596.1	50S ribosomal protein L19	-
LYZ37_RS02160 (LYZ37_02160)	yacG	443425..443619 (-)	195	WP_272786274.1	DNA gyrase inhibitor YacG	-
LYZ37_RS02165 (LYZ37_02165)	zapD	443682..444422 (-)	741	WP_272786275.1	cell division protein ZapD	-
LYZ37_RS02170 (LYZ37_02170)	coaE	444457..445065 (-)	609	WP_272786276.1	dephospho-CoA kinase	-
LYZ37_RS02175 (LYZ37_02175)	pilD	445067..445936 (-)	870	WP_272786277.1	prepilin peptidase	Machinery gene
LYZ37_RS02180 (LYZ37_02180)	pilC	445995..447218 (-)	1224	WP_272786278.1	type II secretion system F family protein	Machinery gene
LYZ37_RS02185 (LYZ37_02185)	pilB	447229..448920 (-)	1692	WP_272787133.1	type IV-A pilus assembly ATPase PilB	Machinery gene
LYZ37_RS02190 (LYZ37_02190)	pilA	448920..449324 (-)	405	WP_272786279.1	pilin	Machinery gene
LYZ37_RS02195 (LYZ37_02195)	nadC	449566..450453 (-)	888	WP_272786280.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32405.45 Da
• Isoelectric Point: 4.7490

>NTDB_id=782099 LYZ37_RS02175 WP_272786277.1 445067..445936(-) (pilD) [Vibrio tubiashii strain FP17]
MDVFDYYPWLFPTLATLFGLIVGSFLNVVIHRLPIIMEREWRAECAESFPEYQISPPEGTYNLSVPNSTCPKCDTPIRMI
DNIPVVSWLILKGKCRQCDNKISMRYPLIEILSAGLCFVIANQFALSYFSIALLFFTFTLIAATFIDLDTMLLPDQLTLP
LTWAGITLALFGISPVSLQDAVIGAMAGYLSLWSIYWLFKLATGKEGMGYGDFKLLAALGAWLGWQYLPMIILLSSLVGL
IFGLIQLKLKSQGIDKAFPFGPYLAIAGWLSMMWGNDILNWYLSNFLGI

Nucleotide

• Length: 870 bp

>NTDB_id=782099 LYZ37_RS02175 WP_272786277.1 445067..445936(-) (pilD) [Vibrio tubiashii strain FP17]
ATGGACGTTTTTGACTATTACCCTTGGCTTTTTCCTACACTAGCAACATTGTTTGGTCTTATCGTAGGCAGCTTTTTAAA
CGTGGTTATTCATCGCCTGCCGATCATCATGGAACGTGAATGGCGAGCCGAATGTGCGGAAAGCTTTCCTGAATACCAAA
TATCGCCCCCAGAAGGGACTTACAACCTCAGCGTTCCAAATTCAACTTGCCCCAAATGCGATACCCCCATTCGCATGATA
GACAACATTCCTGTTGTTAGTTGGCTGATACTGAAAGGGAAATGTCGTCAATGCGATAATAAAATAAGCATGCGCTACCC
TCTGATTGAGATCTTATCAGCAGGTCTATGTTTTGTTATCGCAAATCAGTTTGCATTGAGCTACTTCTCGATTGCCTTGC
TGTTTTTCACCTTTACCCTTATCGCGGCAACCTTTATTGATCTCGACACCATGCTGCTGCCAGACCAACTCACTCTTCCT
CTAACTTGGGCAGGAATTACACTCGCTTTGTTCGGAATAAGTCCTGTGTCTCTGCAAGACGCGGTGATCGGTGCAATGGC
TGGCTATCTTTCTTTATGGTCAATTTACTGGCTGTTTAAGCTAGCCACAGGCAAAGAAGGGATGGGTTACGGAGACTTTA
AACTGCTTGCCGCCTTAGGCGCTTGGCTGGGTTGGCAGTATTTGCCGATGATCATTTTGCTCTCTTCTTTAGTTGGCTTA
ATTTTTGGCCTCATTCAGCTCAAATTGAAAAGCCAAGGAATCGACAAAGCCTTCCCATTTGGCCCTTATTTAGCTATTGC
AGGCTGGTTGAGCATGATGTGGGGAAATGACATTCTCAATTGGTATTTAAGCAACTTTTTAGGAATCTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (135-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-123)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	74.048	100	0.74
pilD	Vibrio cholerae strain A1552	72.222	99.654	0.72
pilD	Acinetobacter baumannii D1279779	49.077	93.772	0.46
pilD	Acinetobacter nosocomialis M2	49.077	93.772	0.46
pilD	Neisseria gonorrhoeae MS11	47.636	95.156	0.453