Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX   Type   Regulator
Locus tag   M0P28_RS01925 Genome accession   NZ_CP116958
Coordinates   344163..344648 (+) Length   161 a.a.
NCBI ID   WP_043910355.1    Uniprot ID   -
Organism   Streptococcus pasteurianus strain WUSP074     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 339163..349648
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M0P28_RS01925 (M0P28_01925) comX/sigX 344163..344648 (+) 486 WP_043910355.1 sigma-70 family RNA polymerase sigma factor Regulator
  M0P28_RS12120 - 345309..345467 (-) 159 Protein_322 IS5/IS1182 family transposase -
  M0P28_RS01930 (M0P28_01930) - 345527..345790 (-) 264 WP_117479781.1 hypothetical protein -
  M0P28_RS01935 (M0P28_01935) - 346038..346178 (-) 141 WP_013851467.1 hypothetical protein -
  M0P28_RS01940 (M0P28_01940) - 346511..347872 (-) 1362 WP_013851468.1 aspartate kinase -
  M0P28_RS01945 (M0P28_01945) - 347967..348617 (+) 651 WP_003063332.1 HAD family hydrolase -
  M0P28_RS01950 (M0P28_01950) - 348813..349601 (+) 789 WP_003063335.1 enoyl-CoA hydratase -

Sequence

Protein


Download         Length: 161 a.a.        Molecular weight: 19448.34 Da        Isoelectric Point: 7.2744

>NTDB_id=781678 M0P28_RS01925 WP_043910355.1 344163..344648(+) (comX/sigX) [Streptococcus pasteurianus strain WUSP074]
MEAFEAYFEKVKPIVLKLRRHYFVKLWDYDDWLQEGRVVLFRLLQEKPDVLQDELSLYSYFKTKFSNYLKDVIRHQESLK
RKFNQLPYEEISDVGHCLAQTSFLDLADYVAYQERLQAVEQRLGIEAREKLAKVMRGERFEGKKAFLAQIEPFFNEFKNN
F

Nucleotide


Download         Length: 486 bp        

>NTDB_id=781678 M0P28_RS01925 WP_043910355.1 344163..344648(+) (comX/sigX) [Streptococcus pasteurianus strain WUSP074]
ATGGAAGCATTTGAAGCCTATTTTGAAAAAGTTAAACCGATTGTACTTAAGTTGCGTCGTCACTATTTTGTTAAACTGTG
GGACTACGATGATTGGTTACAAGAGGGACGGGTGGTTCTTTTCCGCCTTTTACAAGAAAAGCCAGACGTGTTGCAGGATG
AGTTGTCCCTTTATTCTTATTTTAAAACAAAGTTTTCCAACTATCTCAAGGATGTGATTCGTCATCAGGAAAGCCTGAAA
CGCAAGTTTAATCAGCTACCATATGAGGAAATTAGTGATGTGGGGCATTGTTTAGCACAAACAAGTTTTCTGGACCTGGC
GGATTATGTGGCTTATCAGGAGCGGCTGCAAGCGGTTGAGCAGCGACTGGGAATAGAGGCACGAGAGAAATTGGCGAAGG
TGATGCGTGGGGAACGCTTTGAGGGAAAAAAGGCTTTTCTAGCCCAGATTGAGCCCTTCTTTAACGAGTTTAAAAATAAT
TTCTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.