Detailed information
Bioinformatically predicted
Overview
| Name | pilA2 | Type | Machinery gene |
| Locus tag | PML25_RS06095 | Genome accession | NZ_CP116672 |
| Coordinates | 1465558..1465983 (+) | Length | 141 a.a. |
| NCBI ID | WP_168958950.1 | Uniprot ID | A0A6V7CDJ8 |
| Organism | Xanthomonas hortorum pv. pelargonii strain 305 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1416869..1493280 | 1465558..1465983 | within | 0 |
Gene organization within MGE regions
Location: 1416869..1493280
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PML25_RS05885 (PML25_05885) | - | 1418269..1418724 (+) | 456 | WP_168960054.1 | hypothetical protein | - |
| PML25_RS05890 (PML25_05890) | - | 1418721..1422404 (+) | 3684 | WP_233366659.1 | peptidoglycan-binding protein | - |
| PML25_RS05900 (PML25_05900) | - | 1423912..1425210 (+) | 1299 | WP_272164465.1 | HlyD family efflux transporter periplasmic adaptor subunit | - |
| PML25_RS05905 (PML25_05905) | - | 1425207..1427423 (+) | 2217 | WP_168960052.1 | peptidase domain-containing ABC transporter | - |
| PML25_RS05910 (PML25_05910) | - | 1427530..1428342 (+) | 813 | WP_006450247.1 | hypothetical protein | - |
| PML25_RS05915 (PML25_05915) | - | 1428382..1428906 (+) | 525 | WP_168960051.1 | hypothetical protein | - |
| PML25_RS05920 (PML25_05920) | - | 1429056..1429943 (-) | 888 | Protein_1169 | ABC transporter permease | - |
| PML25_RS05925 (PML25_05925) | - | 1430018..1431126 (+) | 1109 | WP_256627460.1 | IS3 family transposase | - |
| PML25_RS05930 (PML25_05930) | - | 1431145..1431537 (-) | 393 | Protein_1171 | ABC transporter permease | - |
| PML25_RS05935 (PML25_05935) | - | 1431600..1432031 (-) | 432 | WP_168960049.1 | toxin-activating lysine-acyltransferase | - |
| PML25_RS05940 (PML25_05940) | - | 1432021..1433835 (-) | 1815 | WP_168960048.1 | protein adenylyltransferase SelO family protein | - |
| PML25_RS23200 | - | 1434351..1434887 (+) | 537 | Protein_1174 | MobA/MobL family protein | - |
| PML25_RS23205 | - | 1434786..1435007 (-) | 222 | Protein_1175 | hypothetical protein | - |
| PML25_RS05950 (PML25_05950) | - | 1436341..1437321 (-) | 981 | WP_256627476.1 | IS5 family transposase | - |
| PML25_RS05955 (PML25_05955) | - | 1437583..1438272 (+) | 690 | WP_233366544.1 | hypothetical protein | - |
| PML25_RS05960 (PML25_05960) | - | 1438377..1439111 (-) | 735 | WP_168958928.1 | hypothetical protein | - |
| PML25_RS05965 (PML25_05965) | - | 1439155..1439604 (-) | 450 | WP_168958929.1 | DUF6527 family protein | - |
| PML25_RS05970 (PML25_05970) | - | 1439601..1440758 (-) | 1158 | WP_272164455.1 | ThiF family adenylyltransferase | - |
| PML25_RS05975 (PML25_05975) | - | 1440786..1441766 (+) | 981 | WP_233366556.1 | IS5 family transposase | - |
| PML25_RS05980 (PML25_05980) | - | 1441923..1442618 (-) | 696 | WP_168958931.1 | multiubiquitin domain-containing protein | - |
| PML25_RS05985 (PML25_05985) | - | 1442766..1443092 (+) | 327 | WP_168958932.1 | helix-turn-helix transcriptional regulator | - |
| PML25_RS05990 (PML25_05990) | - | 1443105..1444010 (+) | 906 | WP_168958933.1 | ImmA/IrrE family metallo-endopeptidase | - |
| PML25_RS05995 (PML25_05995) | - | 1444272..1445486 (-) | 1215 | WP_168958934.1 | MFS transporter | - |
| PML25_RS06000 (PML25_06000) | - | 1445483..1446676 (-) | 1194 | WP_168958935.1 | serine hydrolase domain-containing protein | - |
| PML25_RS06005 (PML25_06005) | - | 1446790..1447710 (+) | 921 | WP_168958936.1 | LysR family transcriptional regulator | - |
| PML25_RS06010 (PML25_06010) | - | 1447809..1448231 (+) | 423 | WP_168958937.1 | YqaA family protein | - |
| PML25_RS06015 (PML25_06015) | - | 1448522..1450768 (-) | 2247 | WP_168958938.1 | methyl-accepting chemotaxis protein | - |
| PML25_RS06020 (PML25_06020) | - | 1451192..1451506 (+) | 315 | WP_023904920.1 | hypothetical protein | - |
| PML25_RS06025 (PML25_06025) | - | 1451503..1451772 (-) | 270 | WP_168958939.1 | hypothetical protein | - |
| PML25_RS06030 (PML25_06030) | - | 1451936..1453123 (-) | 1188 | WP_168958940.1 | hypothetical protein | - |
| PML25_RS06035 (PML25_06035) | - | 1453378..1453773 (+) | 396 | WP_168959001.1 | hypothetical protein | - |
| PML25_RS06040 (PML25_06040) | - | 1453862..1454254 (+) | 393 | WP_055824272.1 | H-NS family nucleoid-associated regulatory protein | - |
| PML25_RS06045 (PML25_06045) | glgX | 1454612..1456744 (-) | 2133 | WP_168958942.1 | glycogen debranching protein GlgX | - |
| PML25_RS06050 (PML25_06050) | rimK | 1457239..1458159 (+) | 921 | WP_168958943.1 | 30S ribosomal protein S6--L-glutamate ligase | - |
| PML25_RS06055 (PML25_06055) | - | 1458503..1459180 (+) | 678 | WP_006448355.1 | response regulator transcription factor | - |
| PML25_RS06060 (PML25_06060) | - | 1459173..1460507 (+) | 1335 | WP_168958944.1 | HAMP domain-containing sensor histidine kinase | - |
| PML25_RS06065 (PML25_06065) | - | 1460656..1461147 (-) | 492 | WP_168958945.1 | GNAT family N-acetyltransferase | - |
| PML25_RS06070 (PML25_06070) | - | 1461144..1461434 (-) | 291 | WP_168958946.1 | DUF1778 domain-containing protein | - |
| PML25_RS06075 (PML25_06075) | - | 1461510..1461911 (-) | 402 | WP_168958947.1 | SymE family type I addiction module toxin | - |
| PML25_RS06080 (PML25_06080) | coaE | 1462440..1463063 (-) | 624 | WP_168958948.1 | dephospho-CoA kinase | - |
| PML25_RS06085 (PML25_06085) | - | 1463077..1463940 (-) | 864 | WP_016849610.1 | A24 family peptidase | - |
| PML25_RS06090 (PML25_06090) | pilC | 1463947..1465206 (-) | 1260 | WP_168958949.1 | type II secretion system F family protein | Machinery gene |
| PML25_RS06095 (PML25_06095) | pilA2 | 1465558..1465983 (+) | 426 | WP_168958950.1 | pilin | Machinery gene |
| PML25_RS06100 (PML25_06100) | - | 1466119..1467708 (+) | 1590 | WP_168958951.1 | phosphoethanolamine transferase | - |
| PML25_RS06105 (PML25_06105) | - | 1467779..1468348 (+) | 570 | WP_233366553.1 | hypothetical protein | - |
| PML25_RS06110 (PML25_06110) | - | 1468318..1469844 (+) | 1527 | WP_168958953.1 | hypothetical protein | - |
| PML25_RS06115 (PML25_06115) | pilB | 1469879..1471615 (+) | 1737 | WP_168958954.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| PML25_RS06120 (PML25_06120) | - | 1471624..1472241 (-) | 618 | WP_168958955.1 | Fic family protein | - |
| PML25_RS06125 (PML25_06125) | - | 1472238..1472420 (-) | 183 | WP_074066024.1 | YhfG family protein | - |
| PML25_RS06130 (PML25_06130) | pilR | 1472494..1473948 (-) | 1455 | WP_180336569.1 | sigma-54 dependent transcriptional regulator | Regulator |
| PML25_RS06135 (PML25_06135) | - | 1474034..1475647 (-) | 1614 | WP_168958956.1 | HAMP domain-containing sensor histidine kinase | - |
| PML25_RS06140 (PML25_06140) | sucC | 1475880..1477049 (+) | 1170 | WP_006450728.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| PML25_RS06145 (PML25_06145) | sucD | 1477074..1477949 (+) | 876 | WP_006450729.1 | succinate--CoA ligase subunit alpha | - |
| PML25_RS06150 (PML25_06150) | - | 1478132..1479073 (-) | 942 | WP_168958957.1 | LysR family transcriptional regulator | - |
| PML25_RS06155 (PML25_06155) | - | 1479154..1479330 (+) | 177 | WP_218974074.1 | hypothetical protein | - |
| PML25_RS06160 (PML25_06160) | - | 1479394..1479798 (+) | 405 | WP_218974075.1 | hypothetical protein | - |
| PML25_RS06165 (PML25_06165) | - | 1480222..1481043 (+) | 822 | WP_233366546.1 | MBL fold metallo-hydrolase | - |
| PML25_RS06170 (PML25_06170) | - | 1481048..1481443 (+) | 396 | WP_168958959.1 | nuclear transport factor 2 family protein | - |
| PML25_RS06175 (PML25_06175) | - | 1481937..1483577 (+) | 1641 | WP_168958960.1 | NAD+ synthase | - |
| PML25_RS06180 (PML25_06180) | - | 1483571..1484548 (-) | 978 | WP_168958961.1 | hypothetical protein | - |
| PML25_RS06185 (PML25_06185) | - | 1484893..1485774 (-) | 882 | WP_168958962.1 | outer membrane protein assembly factor BamD | - |
| PML25_RS06190 (PML25_06190) | rluD | 1485894..1486889 (+) | 996 | WP_168958963.1 | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | - |
| PML25_RS06195 (PML25_06195) | pgeF | 1486891..1487706 (+) | 816 | WP_168958964.1 | peptidoglycan editing factor PgeF | - |
| PML25_RS06200 (PML25_06200) | - | 1487709..1488233 (+) | 525 | WP_168958965.1 | DUF4166 domain-containing protein | - |
| PML25_RS06205 (PML25_06205) | - | 1488349..1488774 (+) | 426 | WP_168958966.1 | thiol-disulfide oxidoreductase DCC family protein | - |
| PML25_RS06210 (PML25_06210) | - | 1489037..1490905 (-) | 1869 | WP_168958967.1 | methyl-accepting chemotaxis protein | - |
Sequence
Protein
Download Length: 141 a.a. Molecular weight: 14385.63 Da Isoelectric Point: 9.0171
>NTDB_id=778987 PML25_RS06095 WP_168958950.1 1465558..1465983(+) (pilA2) [Xanthomonas hortorum pv. pelargonii strain 305]
MKKQQGFTLIELMIVVAIIAILAAIALPAYQDYTTRAKLSEALTMSAPAKLAVTETSSSLGGLAQVTAANSGYAFPGATK
YVSGIAITSATGQVAVTSTVPNATGTILLTPTDVGGGQLKWTCSSAINVKYLPAECRNSGT
MKKQQGFTLIELMIVVAIIAILAAIALPAYQDYTTRAKLSEALTMSAPAKLAVTETSSSLGGLAQVTAANSGYAFPGATK
YVSGIAITSATGQVAVTSTVPNATGTILLTPTDVGGGQLKWTCSSAINVKYLPAECRNSGT
Nucleotide
Download Length: 426 bp
>NTDB_id=778987 PML25_RS06095 WP_168958950.1 1465558..1465983(+) (pilA2) [Xanthomonas hortorum pv. pelargonii strain 305]
ATGAAGAAGCAGCAAGGCTTTACACTTATCGAACTGATGATCGTGGTCGCGATCATCGCCATCCTGGCCGCCATCGCGCT
GCCGGCTTATCAGGACTACACCACTCGCGCCAAGCTCAGTGAAGCGCTGACGATGTCGGCGCCTGCCAAGCTTGCGGTAA
CTGAGACTTCATCGTCGCTCGGCGGCCTCGCTCAGGTTACTGCGGCAAATTCGGGCTACGCATTCCCGGGTGCCACGAAG
TATGTCAGCGGCATCGCCATCACCAGTGCTACGGGCCAAGTCGCTGTAACCTCCACCGTGCCGAACGCAACCGGTACCAT
CCTGCTGACCCCGACTGATGTCGGTGGTGGCCAGCTGAAGTGGACCTGCTCTTCCGCCATCAACGTCAAGTACCTGCCGG
CGGAGTGCCGTAACTCGGGCACCTGA
ATGAAGAAGCAGCAAGGCTTTACACTTATCGAACTGATGATCGTGGTCGCGATCATCGCCATCCTGGCCGCCATCGCGCT
GCCGGCTTATCAGGACTACACCACTCGCGCCAAGCTCAGTGAAGCGCTGACGATGTCGGCGCCTGCCAAGCTTGCGGTAA
CTGAGACTTCATCGTCGCTCGGCGGCCTCGCTCAGGTTACTGCGGCAAATTCGGGCTACGCATTCCCGGGTGCCACGAAG
TATGTCAGCGGCATCGCCATCACCAGTGCTACGGGCCAAGTCGCTGTAACCTCCACCGTGCCGAACGCAACCGGTACCAT
CCTGCTGACCCCGACTGATGTCGGTGGTGGCCAGCTGAAGTGGACCTGCTCTTCCGCCATCAACGTCAAGTACCTGCCGG
CGGAGTGCCGTAACTCGGGCACCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA2 | Legionella pneumophila str. Paris |
52.941 |
96.454 |
0.511 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
52.941 |
96.454 |
0.511 |
| pilE | Neisseria elongata subsp. glycolytica ATCC 29315 |
36.216 |
100 |
0.475 |
| pilA | Ralstonia pseudosolanacearum GMI1000 |
39.634 |
100 |
0.461 |
| comP | Acinetobacter baylyi ADP1 |
43.537 |
100 |
0.454 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
42.754 |
97.872 |
0.418 |
| pilE | Neisseria gonorrhoeae strain FA1090 |
37.342 |
100 |
0.418 |
| pilA/pilA1 | Eikenella corrodens VA1 |
39.333 |
100 |
0.418 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
41.606 |
97.163 |
0.404 |
| pilE | Neisseria gonorrhoeae MS11 |
35.625 |
100 |
0.404 |
| pilA | Pseudomonas aeruginosa PAK |
35.065 |
100 |
0.383 |
| pilA | Acinetobacter baumannii strain A118 |
36.111 |
100 |
0.369 |