Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA2   Type   Machinery gene
Locus tag   PE064_RS10760 Genome accession   NZ_CP116007
Coordinates   2310205..2310615 (-) Length   136 a.a.
NCBI ID   WP_271249200.1    Uniprot ID   -
Organism   Pseudoxanthomonas mexicana strain DMF-5     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2305205..2315615
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PE064_RS10740 (PE064_10740) - 2305618..2306544 (-) 927 WP_271249196.1 hypothetical protein -
  PE064_RS10745 (PE064_10745) - 2306514..2307122 (-) 609 WP_271249197.1 class I SAM-dependent methyltransferase -
  PE064_RS10750 (PE064_10750) - 2307119..2308093 (-) 975 WP_271249198.1 glycosyltransferase family 2 protein -
  PE064_RS10755 (PE064_10755) - 2308090..2310135 (-) 2046 WP_271249199.1 tetratricopeptide repeat protein -
  PE064_RS10760 (PE064_10760) pilA2 2310205..2310615 (-) 411 WP_271249200.1 pilin Machinery gene
  PE064_RS10765 (PE064_10765) - 2311100..2314129 (+) 3030 WP_271249201.1 spermine synthase -
  PE064_RS10770 (PE064_10770) pilR 2314187..2315587 (-) 1401 WP_271249202.1 sigma-54 dependent transcriptional regulator Regulator

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 13731.99 Da        Isoelectric Point: 9.5584

>NTDB_id=774881 PE064_RS10760 WP_271249200.1 2310205..2310615(-) (pilA2) [Pseudoxanthomonas mexicana strain DMF-5]
MKKNMQGFTLIELMIVIAILGILLAIAIPAYQDYLARARAAEGLNMAAPAKLAVSEATLGSANGKTLPPTSTAAGYTAST
SKYVASIKIAGGTITVTTKNTGCAADPVFTLTPTTGAGKVSWTCTSGSSCAPASCR

Nucleotide


Download         Length: 411 bp        

>NTDB_id=774881 PE064_RS10760 WP_271249200.1 2310205..2310615(-) (pilA2) [Pseudoxanthomonas mexicana strain DMF-5]
ATGAAGAAGAACATGCAGGGCTTCACCCTGATCGAACTGATGATCGTCATCGCCATCCTGGGCATCCTGCTGGCCATCGC
CATCCCGGCCTATCAGGACTACCTGGCCCGCGCCCGTGCCGCTGAAGGCCTGAACATGGCCGCCCCGGCCAAGCTGGCCG
TGTCGGAAGCCACCCTGGGCTCGGCCAACGGCAAGACCCTGCCGCCCACCTCGACAGCTGCTGGCTATACGGCATCGACC
TCTAAGTACGTCGCCAGCATCAAGATCGCAGGCGGCACCATCACGGTTACCACCAAGAACACGGGCTGCGCTGCCGATCC
CGTATTTACACTGACTCCGACCACAGGTGCCGGCAAGGTCAGCTGGACCTGCACCTCAGGCTCGTCCTGCGCCCCGGCGT
CCTGCCGCTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(36-136)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA2 Legionella pneumophila str. Paris

53.237

100

0.544
  pilA2 Legionella pneumophila strain ERS1305867

52.518

100

0.537
  pilA Ralstonia pseudosolanacearum GMI1000

43.506

100

0.493
  pilA/pilA1 Eikenella corrodens VA1

39.103

100

0.449
  comP Acinetobacter baylyi ADP1

42.069

100

0.449
  pilA/pilAI Pseudomonas stutzeri DSM 10701

45.113

97.794

0.441
  pilA Haemophilus influenzae Rd KW20

44.355

91.176

0.404
  pilA Haemophilus influenzae 86-028NP

44.355

91.176

0.404
  pilE Neisseria gonorrhoeae strain FA1090

42.063

92.647

0.39
  pilE Neisseria gonorrhoeae MS11

40.945

93.382

0.382
  pilA Acinetobacter baumannii strain A118

37.984

94.853

0.36