Detailed information NTG0774882

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: PE064_RS10770
• Genome accession: NZ_CP116007
• Coordinates: 2314187..2315587 (-)
• Length: 466 a.a.
• NCBI ID: WP_271249202.1
• Uniprot ID: -
• Organism: Pseudoxanthomonas mexicana strain DMF-5
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 2309187..2320587

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PE064_RS10760 (PE064_10760)	pilA2	2310205..2310615 (-)	411	WP_271249200.1	pilin	Machinery gene
PE064_RS10765 (PE064_10765)	-	2311100..2314129 (+)	3030	WP_271249201.1	spermine synthase	-
PE064_RS10770 (PE064_10770)	pilR	2314187..2315587 (-)	1401	WP_271249202.1	sigma-54 dependent transcriptional regulator	Regulator
PE064_RS10775 (PE064_10775)	-	2315776..2317398 (-)	1623	WP_271249203.1	ATP-binding protein	-
PE064_RS10780 (PE064_10780)	sucC	2317599..2318768 (+)	1170	WP_185896918.1	ADP-forming succinate--CoA ligase subunit beta	-
PE064_RS10785 (PE064_10785)	sucD	2318864..2319742 (+)	879	WP_185896917.1	succinate--CoA ligase subunit alpha	-
PE064_RS10790 (PE064_10790)	-	2319864..2320439 (+)	576	WP_271251516.1	sigma-70 family RNA polymerase sigma factor	-

Sequence

Protein

• Length: 466 a.a.
• Molecular weight: 50553.78 Da
• Isoelectric Point: 5.5379

>NTDB_id=774882 PE064_RS10770 WP_271249202.1 2314187..2315587(-) (pilR) [Pseudoxanthomonas mexicana strain DMF-5]
MNQSRSALIVDDERDIRELLTLTLGRMGLRIDTAANVGEARELLARNTYDLCFTDMRLPDGNGIDLVGEIARNYPNTPVA
MITAFGNIELAVEALKAGAFDFVSKPVDLAVLRGLVKHALELNNTERAPPPPPPPEQASRLLGSSAAMDALRETIAKVAR
SQAPVYIMGESGTGKELVARTIHEQGARASGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADKQGLFQAANGGTLFLD
EVAELPLPMQVKLLRAIQEKAVRPVGASSEVQVDVRILSATHKDLGELAADGRFRHDLYYRINVIELRVPPLHERTGDLA
QLTSAILDRLAAQHGRMAPSVSPEAMEALGRYPFPGNVRELENILERALAMSEGHSIEIDDLYLPQAPAGRKFGGDFNPG
EVVRDAPGAVDVDPAAGALPDYIEQLERAAIQKALEENRWNKTKAAAQLGITFRALRYKLKKLGME

Nucleotide

• Length: 1401 bp

>NTDB_id=774882 PE064_RS10770 WP_271249202.1 2314187..2315587(-) (pilR) [Pseudoxanthomonas mexicana strain DMF-5]
ATGAATCAAAGCCGTAGCGCCCTGATCGTCGACGACGAACGCGACATCCGAGAACTGCTGACACTGACGCTGGGCCGCAT
GGGCCTGCGCATCGACACCGCTGCCAACGTGGGCGAAGCCCGCGAACTGCTGGCCCGCAACACCTACGATCTCTGCTTCA
CCGACATGCGCCTGCCCGACGGCAACGGCATCGACCTGGTCGGCGAGATCGCGCGCAACTATCCGAATACACCAGTGGCG
ATGATCACCGCCTTCGGCAACATCGAGCTGGCCGTGGAGGCGCTGAAGGCCGGCGCCTTCGATTTCGTCAGCAAGCCGGT
CGACCTGGCCGTGCTGCGCGGCCTGGTGAAGCACGCGCTGGAACTGAACAACACCGAGCGCGCACCGCCACCGCCGCCAC
CGCCGGAACAGGCCAGCCGCCTGCTGGGCAGTTCGGCGGCGATGGACGCGCTGCGCGAAACCATTGCCAAGGTGGCCCGC
AGCCAGGCGCCGGTCTACATCATGGGCGAGTCCGGCACCGGCAAGGAGCTGGTGGCCCGCACCATCCACGAACAGGGCGC
GCGTGCGTCCGGTCCCTTCGTACCGGTCAACTGCGGCGCCATTCCGGCCGAGCTGATGGAAAGCGAGTTCTTCGGCCACA
AGAAAGGCAGCTTCACCGGCGCGCATGCCGACAAGCAGGGCCTGTTCCAGGCGGCCAACGGTGGCACGCTGTTCCTGGAC
GAGGTGGCCGAGTTGCCGCTGCCCATGCAGGTGAAGCTGCTGCGCGCCATCCAGGAGAAGGCGGTGCGTCCAGTCGGCGC
CTCCAGCGAGGTGCAGGTGGACGTGCGCATCCTCTCGGCCACGCACAAGGACCTGGGCGAGCTGGCGGCCGATGGCCGCT
TCCGCCATGACCTGTACTACCGCATCAACGTCATCGAGCTGCGCGTGCCGCCGCTGCACGAGCGGACGGGCGACCTGGCG
CAGCTGACCAGCGCCATCCTGGATCGCCTGGCGGCCCAGCACGGGCGCATGGCGCCGTCGGTGTCGCCGGAAGCGATGGA
GGCGCTGGGGCGCTATCCGTTCCCGGGCAATGTGCGCGAGCTGGAGAACATCCTGGAGCGCGCGCTGGCCATGTCCGAGG
GCCACAGCATCGAGATCGACGATCTGTACCTGCCGCAGGCCCCGGCCGGCAGGAAGTTCGGCGGCGACTTCAACCCCGGC
GAAGTGGTGCGCGACGCGCCCGGCGCCGTCGACGTGGACCCCGCCGCGGGCGCCCTGCCCGACTACATCGAGCAGTTGGA
GCGCGCGGCCATCCAGAAGGCCCTGGAAGAGAACCGGTGGAACAAGACGAAGGCGGCGGCCCAGCTGGGCATCACCTTCC
GCGCCTTGCGCTACAAGCTGAAGAAGTTAGGGATGGAGTGA

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (142-307)

• Bacterial regulatory protein, Fis family (HTH_8) (423-463)

• Response regulator receiver domain (Response_reg) (8-114)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	61.905	99.142	0.614
pilR	Acinetobacter baumannii strain A118	48.077	100	0.483