Detailed information
Bioinformatically predicted
Overview
| Name | comEA | Type | Machinery gene |
| Locus tag | PG915_RS05055 | Genome accession | NZ_CP115920 |
| Coordinates | 1102010..1102270 (+) | Length | 86 a.a. |
| NCBI ID | WP_418642294.1 | Uniprot ID | - |
| Organism | Vibrio chaetopteri strain CB1-14 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1097010..1107270
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PG915_RS05045 (PG915_05040) | - | 1099468..1099740 (+) | 273 | WP_006075676.1 | HU family DNA-binding protein | - |
| PG915_RS05050 (PG915_05045) | ppiD | 1099926..1101785 (+) | 1860 | WP_353498127.1 | peptidylprolyl isomerase | - |
| PG915_RS05055 (PG915_05050) | comEA | 1102010..1102270 (+) | 261 | WP_418642294.1 | ComEA family DNA-binding protein | Machinery gene |
| PG915_RS05060 (PG915_05055) | rrtA | 1102260..1102817 (-) | 558 | WP_353498129.1 | rhombosortase | - |
| PG915_RS05065 (PG915_05060) | - | 1102816..1103427 (+) | 612 | WP_353498130.1 | tRNA-uridine aminocarboxypropyltransferase | - |
| PG915_RS05070 (PG915_05065) | - | 1103472..1104824 (-) | 1353 | WP_353498132.1 | anti-phage deoxyguanosine triphosphatase | - |
| PG915_RS05075 (PG915_05070) | yfbR | 1104839..1105423 (-) | 585 | WP_353498133.1 | 5'-deoxynucleotidase | - |
| PG915_RS05080 (PG915_05075) | - | 1105505..1106719 (-) | 1215 | WP_353498134.1 | pyridoxal phosphate-dependent aminotransferase | - |
Sequence
Protein
Download Length: 86 a.a. Molecular weight: 9303.60 Da Isoelectric Point: 4.7962
>NTDB_id=774453 PG915_RS05055 WP_418642294.1 1102010..1102270(+) (comEA) [Vibrio chaetopteri strain CB1-14]
MLLAAPTATVWAADGDKLEGIDITVNINQAEPEELAELLKGVGIEKAQKIVDYRKQHGKFTSADDLTQVKGIGAATVEKN
RDRITL
MLLAAPTATVWAADGDKLEGIDITVNINQAEPEELAELLKGVGIEKAQKIVDYRKQHGKFTSADDLTQVKGIGAATVEKN
RDRITL
Nucleotide
Download Length: 261 bp
>NTDB_id=774453 PG915_RS05055 WP_418642294.1 1102010..1102270(+) (comEA) [Vibrio chaetopteri strain CB1-14]
ATGTTGCTAGCGGCGCCTACCGCCACTGTATGGGCCGCTGACGGTGACAAACTGGAAGGTATAGACATTACGGTAAATAT
TAACCAAGCCGAGCCAGAGGAGCTGGCAGAGCTCTTAAAAGGAGTCGGTATTGAGAAGGCGCAAAAGATTGTTGATTATC
GCAAGCAGCACGGTAAGTTCACGTCTGCTGATGATTTAACCCAGGTCAAAGGCATCGGCGCAGCGACGGTAGAAAAAAAC
CGCGACCGAATTACCCTTTAA
ATGTTGCTAGCGGCGCCTACCGCCACTGTATGGGCCGCTGACGGTGACAAACTGGAAGGTATAGACATTACGGTAAATAT
TAACCAAGCCGAGCCAGAGGAGCTGGCAGAGCTCTTAAAAGGAGTCGGTATTGAGAAGGCGCAAAAGATTGTTGATTATC
GCAAGCAGCACGGTAAGTTCACGTCTGCTGATGATTTAACCCAGGTCAAAGGCATCGGCGCAGCGACGGTAGAAAAAAAC
CGCGACCGAATTACCCTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA | Vibrio campbellii strain DS40M4 |
56.18 |
100 |
0.581 |
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
56.977 |
100 |
0.57 |
| comEA | Vibrio cholerae C6706 |
67.647 |
79.07 |
0.535 |
| comEA | Vibrio cholerae strain A1552 |
67.647 |
79.07 |
0.535 |
| comEA | Acinetobacter baylyi ADP1 |
54.412 |
79.07 |
0.43 |
| Cj0011c | Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 |
41.86 |
100 |
0.419 |
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
53.226 |
72.093 |
0.384 |
| comE1/comEA | Haemophilus influenzae Rd KW20 |
51.613 |
72.093 |
0.372 |
| comEA/celA/cilE | Streptococcus mitis NCTC 12261 |
50 |
72.093 |
0.36 |
| comEA/celA/cilE | Streptococcus mitis SK321 |
47.692 |
75.581 |
0.36 |
| comE | Neisseria gonorrhoeae MS11 |
49.206 |
73.256 |
0.36 |
| comE | Neisseria gonorrhoeae MS11 |
49.206 |
73.256 |
0.36 |
| comE | Neisseria gonorrhoeae MS11 |
49.206 |
73.256 |
0.36 |
| comE | Neisseria gonorrhoeae MS11 |
49.206 |
73.256 |
0.36 |