Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilU   Type   Machinery gene
Locus tag   OZ429_RS02845 Genome accession   NZ_CP114134
Coordinates   595508..596641 (-) Length   377 a.a.
NCBI ID   WP_269124747.1    Uniprot ID   -
Organism   Xanthomonas fragariae strain YLX21     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 590508..601641
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OZ429_RS02820 (OZ429_02820) - 590961..591323 (-) 363 WP_269124744.1 phasin family protein -
  OZ429_RS02825 (OZ429_02825) queD 591529..591882 (-) 354 WP_002814044.1 6-carboxytetrahydropterin synthase QueD -
  OZ429_RS02830 (OZ429_02830) - 592001..593398 (-) 1398 WP_269124745.1 DEAD/DEAH box helicase -
  OZ429_RS02835 (OZ429_02835) - 593776..594765 (+) 990 WP_269124746.1 fumarylacetoacetate hydrolase family protein -
  OZ429_RS02840 (OZ429_02840) maiA 594809..595482 (+) 674 Protein_537 maleylacetoacetate isomerase -
  OZ429_RS02845 (OZ429_02845) pilU 595508..596641 (-) 1134 WP_269124747.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  OZ429_RS02850 (OZ429_02850) - 596740..597123 (+) 384 WP_269124748.1 DUF4398 domain-containing protein -
  OZ429_RS02855 (OZ429_02855) - 597183..598079 (+) 897 WP_269126769.1 hypothetical protein -
  OZ429_RS02860 (OZ429_02860) - 598433..598651 (+) 219 WP_002814034.1 YdcH family protein -
  OZ429_RS02865 (OZ429_02865) - 598872..600242 (+) 1371 WP_269124750.1 pyridoxal-phosphate dependent enzyme -
  OZ429_RS02870 (OZ429_02870) - 600332..601528 (+) 1197 WP_269124752.1 cystathionine gamma-synthase -

Sequence

Protein


Download         Length: 377 a.a.        Molecular weight: 42060.33 Da        Isoelectric Point: 6.2928

>NTDB_id=764492 OZ429_RS02845 WP_269124747.1 595508..596641(-) (pilU) [Xanthomonas fragariae strain YLX21]
MDIGYFLKLMTEKNASDMFLTTGAPVYIKIEGKLYPLGNTGLPPGIVRKIAYSLMDEEQVRRFERELEFNMAIALQDAGR
FRVNVFKQRGEVGMVIRAIRSRIPSIEELNLPQVLKDIIMTPRGLVLVVGSTGSGKSTSLASMIDHRNSTTTGHILTIED
PIEYLHKHKMSIVNQREVGLDTHTFQSALKNAMREAPDVILIGEILDAETMEAAIAFAETGHLCLATLHSNNADQTIERI
LNFFQESAHKNVLMNLALNLRAVVSQRLVKGADGRRRPATEVLLNTPMIRDLLRRGQVHEVKQAMEESLEEGMQTFDQCL
FRMVKSGEIEQEEALRAADSRDGLALKFRLSEGGSGEHDPYADYETAAAPKISHGFI

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=764492 OZ429_RS02845 WP_269124747.1 595508..596641(-) (pilU) [Xanthomonas fragariae strain YLX21]
ATGGATATCGGCTACTTCCTGAAGCTGATGACCGAAAAGAATGCCTCGGACATGTTCTTGACCACCGGCGCACCGGTGTA
CATCAAGATCGAAGGCAAGCTCTACCCGCTCGGCAATACGGGGTTGCCGCCAGGAATAGTCAGGAAAATCGCATATTCGT
TGATGGACGAAGAGCAAGTGAGGCGGTTCGAGCGCGAGTTGGAATTCAACATGGCAATCGCCCTGCAGGATGCCGGGCGC
TTCCGCGTGAACGTGTTCAAACAGCGTGGCGAGGTGGGGATGGTGATCCGCGCCATCCGCAGCAGGATCCCCAGCATCGA
AGAACTCAATCTGCCGCAGGTGCTTAAGGACATCATCATGACACCGCGCGGGCTGGTGCTGGTGGTCGGCTCGACCGGCT
CGGGTAAGTCGACCTCGCTGGCTTCGATGATCGACCACCGCAACAGCACTACTACCGGGCACATCCTCACTATCGAGGAC
CCGATCGAATATCTGCACAAGCACAAGATGTCGATCGTGAATCAGCGCGAGGTAGGTCTGGATACGCATACCTTCCAAAG
CGCGCTAAAGAACGCGATGCGTGAAGCGCCGGACGTGATCCTGATCGGCGAAATCCTAGACGCCGAAACCATGGAGGCGG
CGATCGCCTTCGCCGAAACCGGTCACCTGTGTCTGGCGACGCTGCACTCCAACAATGCCGACCAGACTATCGAGCGCATC
CTCAATTTCTTCCAGGAAAGCGCGCACAAGAATGTGCTGATGAATCTGGCGCTGAATCTGCGCGCCGTCGTCTCACAGCG
GCTGGTCAAGGGCGCGGACGGACGCCGCCGCCCCGCTACCGAAGTGCTGCTCAACACCCCGATGATTCGCGACCTACTGC
GTCGCGGCCAGGTGCACGAGGTCAAACAGGCGATGGAGGAATCTCTGGAAGAAGGCATGCAGACCTTCGACCAATGCCTG
TTCCGGATGGTCAAATCAGGCGAAATCGAGCAGGAGGAAGCGCTGCGCGCAGCCGACTCGCGCGATGGCCTGGCGTTGAA
GTTCCGCCTGTCCGAAGGCGGCTCCGGCGAGCACGACCCGTATGCGGATTACGAAACGGCAGCGGCGCCGAAGATCAGTC
ACGGGTTTATCTGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(67-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilU Pseudomonas stutzeri DSM 10701

52.368

95.225

0.499
  pilU Vibrio cholerae strain A1552

48.889

95.491

0.467
  pilU Acinetobacter baylyi ADP1

49.153

93.899

0.462
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

44.764

100

0.454
  pilT Pseudomonas aeruginosa PAK

42.216

88.594

0.374
  pilT Acinetobacter baumannii strain A118

41.42

89.655

0.371
  pilT Acinetobacter nosocomialis M2

41.42

89.655

0.371
  pilT Acinetobacter baumannii D1279779

41.42

89.655

0.371
  pilT Legionella pneumophila strain Lp02

41.124

89.655

0.369
  pilT Legionella pneumophila strain ERS1305867

41.124

89.655

0.369
  pilT Acinetobacter baylyi ADP1

40.882

90.186

0.369
  pilT Pseudomonas stutzeri DSM 10701

41.018

88.594

0.363