Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX   Type   Regulator
Locus tag   OIY87_RS01805 Genome accession   NZ_CP113954
Coordinates   326856..327344 (+) Length   162 a.a.
NCBI ID   WP_077496210.1    Uniprot ID   -
Organism   Streptococcus gallolyticus strain XH2168     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 321856..332344
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OIY87_RS01805 (OIY87_03100) comX/sigX 326856..327344 (+) 489 WP_077496210.1 sigma-70 family RNA polymerase sigma factor Regulator
  OIY87_RS01810 (OIY87_03105) - 327455..329077 (-) 1623 WP_269725118.1 glycoside hydrolase family 5 protein -
  OIY87_RS01815 (OIY87_03110) - 329527..330888 (-) 1362 WP_061459045.1 aspartate kinase -
  OIY87_RS01820 (OIY87_03115) - 330982..331629 (+) 648 WP_269725119.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 162 a.a.        Molecular weight: 19523.47 Da        Isoelectric Point: 7.9997

>NTDB_id=763811 OIY87_RS01805 WP_077496210.1 326856..327344(+) (comX/sigX) [Streptococcus gallolyticus strain XH2168]
MMETFESYFEKVKPIVLKLRRHYFVKLWDYDDWLQEGRVVLFRLLQEKPDLLQDDLSLYAYFKTKFSNYLKDVIRHQESL
KRKFNQLPYEEISDVGHCLAQASFLDLADYVAYQERLQAVEQRLGVGAREKLAKVMRGERFEGKKAFLTQIEPFFNEFKN
NF

Nucleotide


Download         Length: 489 bp        

>NTDB_id=763811 OIY87_RS01805 WP_077496210.1 326856..327344(+) (comX/sigX) [Streptococcus gallolyticus strain XH2168]
ATGATGGAAACCTTTGAAAGCTATTTTGAAAAGGTCAAACCGATTGTGCTTAAGTTGCGTCGTCACTATTTTGTCAAATT
ATGGGACTATGATGATTGGTTACAAGAGGGACGGGTGGTTCTGTTCCGTCTCCTGCAAGAAAAGCCAGACTTGTTGCAGG
ACGACTTGTCCCTTTATGCTTATTTTAAAACGAAGTTTTCCAACTATCTCAAGGATGTGATTCGCCATCAAGAGAGTTTG
AAACGCAAGTTTAATCAGCTGCCATATGAGGAGATTAGTGACGTGGGGCATTGTTTGGCGCAAGCAAGCTTTCTGGATCT
GGCGGATTATGTGGCTTATCAGGAGCGGCTGCAGGCGGTTGAGCAGCGACTGGGAGTAGGGGCACGAGAGAAATTGGCGA
AGGTGATGCGAGGGGAGCGCTTTGAGGGCAAGAAGGCGTTTCTAACCCAAATTGAGCCCTTCTTTAACGAGTTTAAAAAT
AATTTCTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.