Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX   Type   Regulator
Locus tag   OIY87_RS01515 Genome accession   NZ_CP113954
Coordinates   267207..267692 (+) Length   161 a.a.
NCBI ID   WP_269725106.1    Uniprot ID   -
Organism   Streptococcus gallolyticus strain XH2168     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 262207..272692
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OIY87_RS01515 (OIY87_02810) comX/sigX 267207..267692 (+) 486 WP_269725106.1 sigma-70 family RNA polymerase sigma factor Regulator
  OIY87_RS01520 (OIY87_02815) - 267832..268098 (+) 267 WP_009853366.1 ACT domain-containing protein -
  OIY87_RS01525 (OIY87_02820) - 268110..269447 (+) 1338 WP_009853367.1 PFL family protein -
  OIY87_RS01530 (OIY87_02825) - 269671..270375 (+) 705 WP_039694351.1 histidine phosphatase family protein -
  OIY87_RS01535 (OIY87_02830) - 270359..271132 (+) 774 WP_269725107.1 M15 family metallopeptidase -
  OIY87_RS01540 (OIY87_02835) - 271129..271710 (+) 582 WP_268729917.1 glycoside hydrolase family 73 protein -

Sequence

Protein


Download         Length: 161 a.a.        Molecular weight: 19433.39 Da        Isoelectric Point: 7.9998

>NTDB_id=763807 OIY87_RS01515 WP_269725106.1 267207..267692(+) (comX/sigX) [Streptococcus gallolyticus strain XH2168]
MMETFESYFEKVKPIVLKLRRHYFVKLWDYDDWLQEGRVVLFRLLQEKPDLLQDDLSLYAYFKTKFSNYLKDVIRHQESL
KRKFNQLPYEEISDVGHCLAQASFLDLADYVAYQERLQAVEQRLGVGAREKLAKVMRGERFEGKKAFLTQIEPFFNEFRE
K

Nucleotide


Download         Length: 486 bp        

>NTDB_id=763807 OIY87_RS01515 WP_269725106.1 267207..267692(+) (comX/sigX) [Streptococcus gallolyticus strain XH2168]
ATGATGGAAACCTTTGAAAGCTATTTTGAAAAGGTCAAACCGATTGTGCTTAAGTTGCGTCGTCACTATTTTGTCAAATT
ATGGGACTATGATGATTGGTTACAAGAGGGACGGGTGGTTCTGTTCCGTCTCCTGCAAGAAAAGCCAGACTTGTTGCAGG
ACGACTTGTCCCTTTATGCTTATTTTAAAACGAAGTTTTCCAACTATCTCAAGGATGTGATTCGCCATCAAGAGAGTTTG
AAACGCAAGTTTAATCAGCTGCCATATGAGGAGATTAGTGACGTGGGGCATTGTTTGGCGCAAGCAAGCTTTCTGGATCT
GGCGGATTATGTGGCTTATCAGGAGCGGCTGCAGGCGGTTGAGCAGCGACTGGGAGTAGGGGCACGAGAGAAATTGGCGA
AGGTGATGCGAGGGGAGCGCTTTGAGGGCAAGAAGGCGTTTCTAACCCAAATTGAGCCCTTCTTTAACGAGTTTAGGGAA
AAATAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.