Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   OXA90_RS13260 Genome accession   NZ_CP113437
Coordinates   2986819..2987478 (-) Length   219 a.a.
NCBI ID   WP_011947563.1    Uniprot ID   -
Organism   Legionella pneumophila strain PATHC007     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2981819..2992478
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OXA90_RS13245 (OXA90_13245) - 2982952..2983611 (+) 660 WP_015961724.1 hypothetical protein -
  OXA90_RS13250 (OXA90_13250) lcl 2983779..2984927 (+) 1149 WP_015961725.1 collagen-like adhesin Lcl -
  OXA90_RS13255 (OXA90_13255) uvrC 2984951..2986807 (-) 1857 WP_015961726.1 excinuclease ABC subunit UvrC -
  OXA90_RS13260 (OXA90_13260) letA 2986819..2987478 (-) 660 WP_011947563.1 two-component system response regulator LetA Regulator
  OXA90_RS13265 (OXA90_13265) phhA 2987603..2988421 (-) 819 WP_015961727.1 phenylalanine 4-monooxygenase -
  OXA90_RS13270 (OXA90_13270) - 2988861..2989958 (+) 1098 WP_015961728.1 competence/damage-inducible protein A -
  OXA90_RS13275 (OXA90_13275) cgtA 2989917..2990942 (-) 1026 WP_015961729.1 Obg family GTPase CgtA -
  OXA90_RS13280 (OXA90_13280) rpmA 2991156..2991434 (-) 279 WP_010948350.1 50S ribosomal protein L27 -
  OXA90_RS13285 (OXA90_13285) rplU 2991447..2991758 (-) 312 WP_010948351.1 50S ribosomal protein L21 -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 24566.53 Da        Isoelectric Point: 5.1572

>NTDB_id=762173 OXA90_RS13260 WP_011947563.1 2986819..2987478(-) (letA) [Legionella pneumophila strain PATHC007]
MIKVLIVDDHALVRMGIRRLLEDMSDVDVVADAESGEQALAYVKTHSPDVVLLDMKMPGIDGWEVTRRLKKTNPNIKVIA
VTAICSDPLPTRVLQLGAMGYLTKESGAEEMAAAIRKVAKGEKYLSAEIAQKMAINSLQEPQDSPFDLLSEREMQVMLMI
TSGMNVQDIADRLFLSSKTINGYRYRMFEKLGIKNDVELTYLAMKHRIIEHPNDLSQDD

Nucleotide


Download         Length: 660 bp        

>NTDB_id=762173 OXA90_RS13260 WP_011947563.1 2986819..2987478(-) (letA) [Legionella pneumophila strain PATHC007]
TTGATTAAAGTATTAATTGTTGATGACCATGCATTGGTTAGAATGGGCATTCGACGATTGCTTGAAGATATGTCGGATGT
TGATGTGGTTGCAGATGCTGAAAGTGGTGAGCAGGCTTTAGCTTATGTGAAAACCCACTCCCCTGATGTCGTATTATTAG
ACATGAAAATGCCTGGGATAGATGGGTGGGAAGTGACACGTCGTTTAAAAAAAACAAACCCAAATATTAAAGTCATAGCC
GTTACAGCTATTTGCTCAGATCCTCTCCCTACTCGAGTATTGCAATTAGGTGCTATGGGATACCTTACTAAAGAATCAGG
GGCTGAAGAAATGGCTGCTGCAATTCGTAAAGTGGCTAAAGGTGAGAAATATCTTAGTGCCGAGATTGCACAAAAAATGG
CAATTAATAGTCTTCAGGAGCCTCAGGATTCCCCCTTTGATTTATTGTCTGAAAGAGAAATGCAAGTCATGTTGATGATT
ACGAGCGGCATGAATGTACAAGACATTGCTGATAGATTATTTTTAAGTAGTAAAACCATCAATGGTTATCGATATAGGAT
GTTTGAAAAATTGGGGATTAAAAATGATGTGGAGCTTACTTATTTGGCTATGAAGCACCGCATTATTGAACACCCCAATG
ATTTGTCACAAGATGATTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(148-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

100

100

1
  letA Legionella pneumophila strain ERS1305867

100

100

1