Detailed information
Bioinformatically predicted
Overview
| Name | pilU | Type | Machinery gene |
| Locus tag | OXA87_RS11790 | Genome accession | NZ_CP113435 |
| Coordinates | 2674514..2675635 (-) | Length | 373 a.a. |
| NCBI ID | WP_061469790.1 | Uniprot ID | - |
| Organism | Legionella pneumophila strain PATHC025 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2669514..2680635
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OXA87_RS11775 (OXA87_11775) | - | 2670400..2670837 (-) | 438 | WP_027219259.1 | hypothetical protein | - |
| OXA87_RS11780 (OXA87_11780) | - | 2671114..2672409 (+) | 1296 | WP_011947165.1 | serine/threonine transporter | - |
| OXA87_RS11785 (OXA87_11785) | ankK | 2672502..2674427 (-) | 1926 | WP_061469789.1 | Dot/Icm T4SS effector AnkK/LegA5 | - |
| OXA87_RS11790 (OXA87_11790) | pilU | 2674514..2675635 (-) | 1122 | WP_061469790.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
| OXA87_RS11795 (OXA87_11795) | - | 2675725..2677653 (-) | 1929 | WP_265677915.1 | L-gulono-gamma-lactone oxidase | - |
| OXA87_RS11800 (OXA87_11800) | - | 2677941..2678777 (-) | 837 | WP_011947169.1 | phytanoyl-CoA dioxygenase family protein | - |
| OXA87_RS11805 (OXA87_11805) | radA | 2678774..2680129 (-) | 1356 | WP_040146513.1 | DNA repair protein RadA | - |
Sequence
Protein
Download Length: 373 a.a. Molecular weight: 41729.03 Da Isoelectric Point: 5.4724
>NTDB_id=762083 OXA87_RS11790 WP_061469790.1 2674514..2675635(-) (pilU) [Legionella pneumophila strain PATHC025]
MDITPFFKLMVDKGASDLFFSVGAPPNIKIEGVTSPIGQVPIKSNQMAEIVLSIMNDAQQKEFESKMELNMAFSLAGVGR
FRINLFRQRGEVAMVVRYIKGEIPSIEDLNLPQILKSLVLELRGLVLVVGSTGSGKSTTLAAMINHRNENHRGHILTIED
PIEYIHQHKKSIVDQREIGIDTLSYDNALKNAMREAPDVILIGEIRDLNSMKHAIAYAETGHLCISTLHANNANQALDRV
INFFPDEARQQILLDLSLNLKAIISLRLIPGVDNQRVAAVEILINSPYISDLIEKGKIDDIKEVMARSTEQGMQTFDQAL
FNLYKEGKITKENAIKYADSKNNVGLQIRLGEEKNFNIQDENLQIQPDDLDKI
MDITPFFKLMVDKGASDLFFSVGAPPNIKIEGVTSPIGQVPIKSNQMAEIVLSIMNDAQQKEFESKMELNMAFSLAGVGR
FRINLFRQRGEVAMVVRYIKGEIPSIEDLNLPQILKSLVLELRGLVLVVGSTGSGKSTTLAAMINHRNENHRGHILTIED
PIEYIHQHKKSIVDQREIGIDTLSYDNALKNAMREAPDVILIGEIRDLNSMKHAIAYAETGHLCISTLHANNANQALDRV
INFFPDEARQQILLDLSLNLKAIISLRLIPGVDNQRVAAVEILINSPYISDLIEKGKIDDIKEVMARSTEQGMQTFDQAL
FNLYKEGKITKENAIKYADSKNNVGLQIRLGEEKNFNIQDENLQIQPDDLDKI
Nucleotide
Download Length: 1122 bp
>NTDB_id=762083 OXA87_RS11790 WP_061469790.1 2674514..2675635(-) (pilU) [Legionella pneumophila strain PATHC025]
ATGGATATTACTCCTTTTTTTAAGCTCATGGTCGATAAAGGTGCCTCAGATTTGTTTTTCAGTGTCGGGGCACCACCAAA
TATTAAAATTGAGGGCGTCACATCACCTATTGGCCAGGTTCCTATCAAATCGAATCAAATGGCAGAAATTGTTTTATCTA
TTATGAATGACGCACAGCAAAAAGAATTTGAGTCTAAAATGGAACTCAATATGGCTTTTTCATTAGCTGGAGTAGGGCGT
TTCCGAATCAATTTATTCAGGCAACGTGGCGAAGTGGCTATGGTGGTGCGTTACATCAAGGGCGAAATACCTTCTATAGA
AGATTTAAATCTTCCTCAAATTTTAAAGTCTCTGGTCTTGGAGTTGCGAGGTTTAGTATTGGTTGTTGGGTCCACGGGAT
CGGGTAAATCAACGACTCTGGCCGCGATGATCAACCACCGTAATGAAAATCACAGAGGGCATATTTTAACAATAGAGGAT
CCTATTGAATATATACATCAACATAAAAAATCAATAGTTGATCAACGAGAGATAGGTATTGATACTCTAAGCTATGACAA
TGCATTGAAAAACGCAATGAGAGAAGCGCCTGATGTTATCTTAATTGGTGAAATTCGTGATCTTAACTCAATGAAACATG
CGATAGCTTATGCTGAAACAGGGCATTTGTGCATTTCCACTTTGCATGCCAATAACGCCAATCAGGCTCTGGATAGAGTA
ATTAATTTTTTCCCCGATGAGGCAAGACAACAGATATTATTAGATTTATCTCTTAATTTAAAAGCAATCATTTCATTACG
TTTGATACCAGGAGTTGATAATCAACGTGTCGCAGCAGTGGAGATCTTAATTAACTCTCCTTATATTTCCGATTTGATTG
AAAAAGGGAAGATAGACGATATTAAAGAAGTCATGGCAAGAAGCACGGAACAAGGCATGCAGACTTTTGATCAGGCTTTG
TTTAATTTATATAAAGAAGGAAAAATCACCAAAGAAAATGCGATTAAGTACGCTGATTCAAAAAACAATGTGGGTTTACA
AATTCGACTGGGTGAAGAAAAAAACTTCAATATTCAAGATGAGAATTTACAAATACAACCCGATGATCTTGATAAGATTT
AA
ATGGATATTACTCCTTTTTTTAAGCTCATGGTCGATAAAGGTGCCTCAGATTTGTTTTTCAGTGTCGGGGCACCACCAAA
TATTAAAATTGAGGGCGTCACATCACCTATTGGCCAGGTTCCTATCAAATCGAATCAAATGGCAGAAATTGTTTTATCTA
TTATGAATGACGCACAGCAAAAAGAATTTGAGTCTAAAATGGAACTCAATATGGCTTTTTCATTAGCTGGAGTAGGGCGT
TTCCGAATCAATTTATTCAGGCAACGTGGCGAAGTGGCTATGGTGGTGCGTTACATCAAGGGCGAAATACCTTCTATAGA
AGATTTAAATCTTCCTCAAATTTTAAAGTCTCTGGTCTTGGAGTTGCGAGGTTTAGTATTGGTTGTTGGGTCCACGGGAT
CGGGTAAATCAACGACTCTGGCCGCGATGATCAACCACCGTAATGAAAATCACAGAGGGCATATTTTAACAATAGAGGAT
CCTATTGAATATATACATCAACATAAAAAATCAATAGTTGATCAACGAGAGATAGGTATTGATACTCTAAGCTATGACAA
TGCATTGAAAAACGCAATGAGAGAAGCGCCTGATGTTATCTTAATTGGTGAAATTCGTGATCTTAACTCAATGAAACATG
CGATAGCTTATGCTGAAACAGGGCATTTGTGCATTTCCACTTTGCATGCCAATAACGCCAATCAGGCTCTGGATAGAGTA
ATTAATTTTTTCCCCGATGAGGCAAGACAACAGATATTATTAGATTTATCTCTTAATTTAAAAGCAATCATTTCATTACG
TTTGATACCAGGAGTTGATAATCAACGTGTCGCAGCAGTGGAGATCTTAATTAACTCTCCTTATATTTCCGATTTGATTG
AAAAAGGGAAGATAGACGATATTAAAGAAGTCATGGCAAGAAGCACGGAACAAGGCATGCAGACTTTTGATCAGGCTTTG
TTTAATTTATATAAAGAAGGAAAAATCACCAAAGAAAATGCGATTAAGTACGCTGATTCAAAAAACAATGTGGGTTTACA
AATTCGACTGGGTGAAGAAAAAAACTTCAATATTCAAGATGAGAATTTACAAATACAACCCGATGATCTTGATAAGATTT
AA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilU | Pseudomonas stutzeri DSM 10701 |
55.056 |
95.442 |
0.525 |
| pilU | Acinetobacter baylyi ADP1 |
52.941 |
95.71 |
0.507 |
| pilU | Vibrio cholerae strain A1552 |
48.286 |
93.834 |
0.453 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
45.428 |
90.885 |
0.413 |
| pilT | Legionella pneumophila strain ERS1305867 |
43.275 |
91.689 |
0.397 |
| pilT | Legionella pneumophila strain Lp02 |
43.275 |
91.689 |
0.397 |
| pilT | Neisseria meningitidis 8013 |
42.363 |
93.029 |
0.394 |
| pilT | Neisseria gonorrhoeae MS11 |
42.363 |
93.029 |
0.394 |
| pilT | Pseudomonas aeruginosa PAK |
42.566 |
91.957 |
0.391 |
| pilT | Pseudomonas stutzeri DSM 10701 |
41.983 |
91.957 |
0.386 |
| pilT | Acinetobacter baumannii strain A118 |
43.114 |
89.544 |
0.386 |
| pilT | Acinetobacter nosocomialis M2 |
43.114 |
89.544 |
0.386 |
| pilT | Acinetobacter baumannii D1279779 |
43.114 |
89.544 |
0.386 |
| pilT | Acinetobacter baylyi ADP1 |
40.882 |
91.153 |
0.373 |
| pilT | Vibrio cholerae strain A1552 |
41.945 |
88.204 |
0.37 |
| pilT | Vibrio cholerae O1 biovar El Tor strain E7946 |
41.945 |
88.204 |
0.37 |