Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   OS088_RS06190 Genome accession   NZ_CP113051
Coordinates   1224601..1225671 (-) Length   356 a.a.
NCBI ID   WP_000776403.1    Uniprot ID   -
Organism   Staphylococcus aureus strain Viktor     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1219601..1230671
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OS088_RS06150 gcvPA 1219778..1221124 (-) 1347 WP_000019687.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  OS088_RS06155 gcvT 1221144..1222235 (-) 1092 WP_267815012.1 glycine cleavage system aminomethyltransferase GcvT -
  OS088_RS06160 - 1222394..1222918 (-) 525 WP_001015122.1 shikimate kinase -
  OS088_RS06165 - 1222908..1223054 (-) 147 WP_001789879.1 hypothetical protein -
  OS088_RS06170 comGF 1223151..1223648 (-) 498 WP_154284346.1 competence type IV pilus minor pilin ComGF Machinery gene
  OS088_RS06175 comGE 1223566..1223865 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  OS088_RS06180 comGD 1223852..1224256 (-) 405 WP_209205909.1 competence type IV pilus minor pilin ComGD Machinery gene
  OS088_RS06185 comGC 1224276..1224587 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  OS088_RS06190 comGB 1224601..1225671 (-) 1071 WP_000776403.1 competence type IV pilus assembly protein ComGB Machinery gene
  OS088_RS06195 comGA 1225643..1226617 (-) 975 WP_000697215.1 competence type IV pilus ATPase ComGA Machinery gene
  OS088_RS06200 - 1226669..1227292 (-) 624 WP_267815017.1 MBL fold metallo-hydrolase -
  OS088_RS06205 - 1227289..1227618 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  OS088_RS06210 - 1227618..1228604 (-) 987 WP_000161315.1 ROK family glucokinase -
  OS088_RS06215 - 1228601..1228804 (-) 204 WP_000087561.1 YqgQ family protein -
  OS088_RS06220 - 1228785..1230248 (-) 1464 WP_158172984.1 rhomboid family protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41487.99 Da        Isoelectric Point: 10.1030

>NTDB_id=759583 OS088_RS06190 WP_000776403.1 1224601..1225671(-) (comGB) [Staphylococcus aureus strain Viktor]
MKLQWINTFKLHSKKRQLSKAQQIDLLLNLCNLLKYGFTLYQSFQFLNLQMTYKNKQLGTTILSEISNGAPCNQILSLIG
YSDTIVMQVYLAERFGNIIDVLEETVNYMKVNRKSEQRLLKTLQYPLILVSIFIAMIIILNLTVIPQFQQLYTSMNIQLS
SFQKTLSFFITSLPTIIVVMLIIVSMLAIIMKLIYNKLNMLNKINFVMKLPLISGYFQLFKTYFVTNELVLFYKNGITLQ
SIVDVYINHSSDPFRQFLGKYLLTYSEMGYGLPQILEKLKCFKPQLIKFVLQGEKRGKLEVELKLYSQILVKQIEDKAIK
QTQFLQPILFLILGLFIVAIYLVIMLPMFQMMQSIK

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=759583 OS088_RS06190 WP_000776403.1 1224601..1225671(-) (comGB) [Staphylococcus aureus strain Viktor]
GTGAAACTACAATGGATAAATACATTTAAACTACATTCTAAGAAGCGACAATTAAGTAAGGCCCAACAAATCGATTTACT
TTTAAATTTATGTAATTTGTTGAAATATGGTTTCACTCTGTATCAAAGTTTTCAATTTTTAAATCTTCAAATGACATATA
AAAATAAGCAATTAGGCACCACCATTCTAAGTGAAATTTCAAATGGTGCACCATGCAACCAGATATTATCACTGATAGGT
TATAGCGATACTATCGTCATGCAAGTATATTTGGCAGAAAGATTTGGCAATATCATAGACGTTCTAGAAGAAACCGTAAA
TTATATGAAAGTGAATAGAAAGTCAGAACAACGATTGTTAAAGACACTGCAATACCCCTTAATACTAGTTTCGATTTTTA
TTGCTATGATTATTATATTAAACCTCACAGTAATTCCACAGTTTCAACAATTATATACTTCTATGAATATTCAACTATCT
TCTTTTCAAAAAACATTGTCTTTTTTCATTACCAGCTTACCTACTATAATTGTAGTAATGCTCATAATAGTATCTATGTT
GGCTATTATTATGAAATTAATTTATAACAAATTAAATATGCTCAATAAGATAAACTTTGTGATGAAACTACCGCTAATAT
CGGGCTATTTCCAATTATTTAAAACTTATTTTGTAACTAATGAATTAGTGTTATTTTATAAAAATGGTATTACACTTCAA
TCAATAGTAGACGTTTATATTAACCATAGTAGTGATCCATTTAGACAGTTTCTAGGTAAATACTTATTAACTTATTCAGA
AATGGGATATGGTTTACCTCAAATTTTAGAAAAACTAAAATGCTTTAAGCCTCAATTAATTAAGTTTGTGCTACAAGGTG
AAAAGAGAGGAAAGCTAGAAGTAGAACTAAAGTTATATTCGCAAATATTAGTAAAACAAATAGAAGATAAAGCGATAAAA
CAGACTCAGTTTTTACAGCCTATTTTATTTTTGATTTTAGGTTTATTTATTGTCGCAATTTATTTGGTAATTATGTTACC
AATGTTTCAAATGATGCAAAGTATAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(227-347)

Type II secretion system (T2SS), protein F (T2SSF)

(29-146)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Staphylococcus aureus MW2

99.438

100

0.994
  comGB Staphylococcus aureus N315

99.438

100

0.994