Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FOF60_RS23085 Genome accession   NZ_CP109811
Coordinates   4571325..4571741 (-) Length   138 a.a.
NCBI ID   WP_192471882.1    Uniprot ID   -
Organism   Mesobacillus jeotgali strain SBJS01     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4566325..4576741
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOF60_RS23070 (FOF60_23070) - 4567449..4570274 (+) 2826 WP_192471883.1 DEAD/DEAH box helicase -
  FOF60_RS23075 (FOF60_23075) - 4570317..4570889 (-) 573 WP_192471919.1 YdcF family protein -
  FOF60_RS23080 (FOF60_23080) - 4571126..4571332 (-) 207 WP_192471922.1 hypothetical protein -
  FOF60_RS23085 (FOF60_23085) ssb 4571325..4571741 (-) 417 WP_192471882.1 single-stranded DNA-binding protein Machinery gene
  FOF60_RS23090 (FOF60_23090) - 4572002..4572436 (+) 435 WP_192471881.1 YwpF family protein -
  FOF60_RS23095 (FOF60_23095) - 4572631..4572903 (-) 273 WP_225650152.1 hypothetical protein -
  FOF60_RS23100 (FOF60_23100) fabZ 4573318..4573740 (-) 423 WP_192471879.1 3-hydroxyacyl-ACP dehydratase FabZ -
  FOF60_RS23105 (FOF60_23105) - 4573828..4574088 (-) 261 WP_192471878.1 DNA-directed RNA polymerase subunit beta -
  FOF60_RS23110 (FOF60_23110) - 4574108..4574956 (-) 849 WP_192471877.1 flagellar hook-basal body protein -
  FOF60_RS23115 (FOF60_23115) - 4575021..4575839 (-) 819 WP_192471876.1 flagellar hook-basal body protein -

Sequence

Protein


Download         Length: 138 a.a.        Molecular weight: 15256.16 Da        Isoelectric Point: 9.0189

>NTDB_id=749514 FOF60_RS23085 WP_192471882.1 4571325..4571741(-) (ssb) [Mesobacillus jeotgali strain SBJS01]
MINQVTLVGRLTRDPDLRYTPDGKAVSNITLAVNRHYKNASGEIEADFVHCILWGKTAENTSNYCKKGSVLGVTGRIQTR
NYDNQEGKRVYVTEVVAEGVRFLSTKPASTREAPQASQPPQQPQTVPAAPQREELPFA

Nucleotide


Download         Length: 417 bp        

>NTDB_id=749514 FOF60_RS23085 WP_192471882.1 4571325..4571741(-) (ssb) [Mesobacillus jeotgali strain SBJS01]
GTGATCAATCAAGTAACGCTAGTCGGCAGGCTGACCAGGGATCCGGACCTCAGGTACACACCCGATGGCAAGGCGGTATC
GAATATAACGCTTGCGGTGAACCGGCATTACAAAAATGCCAGCGGCGAAATTGAAGCAGATTTTGTCCACTGCATCCTCT
GGGGAAAAACAGCAGAAAACACATCGAATTATTGTAAAAAAGGCTCCGTCCTTGGAGTCACCGGCCGCATCCAAACGCGG
AACTATGATAACCAGGAAGGTAAACGTGTCTACGTGACTGAAGTCGTTGCTGAAGGAGTAAGGTTTTTAAGCACAAAACC
GGCCAGTACGAGGGAAGCGCCGCAAGCTTCACAACCACCTCAACAGCCGCAGACTGTACCAGCAGCACCGCAGAGAGAGG
AGCTTCCATTTGCATAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

49.032

100

0.551
  ssbB Bacillus subtilis subsp. subtilis str. 168

70.093

77.536

0.543
  ssbA Bacillus subtilis subsp. subtilis str. 168

63.208

76.812

0.486
  ssbB Streptococcus sobrinus strain NIDR 6715-7

41.304

100

0.413
  ssbB/cilA Streptococcus mitis NCTC 12261

40.146

99.275

0.399
  ssbB/cilA Streptococcus pneumoniae TIGR4

40.146

99.275

0.399
  ssb Neisseria gonorrhoeae MS11

33.75

100

0.391
  ssb Neisseria meningitidis MC58

33.75

100

0.391
  ssbB/cilA Streptococcus pneumoniae R6

39.416

99.275

0.391
  ssbB/cilA Streptococcus mitis SK321

39.416

99.275

0.391
  ssbB/cilA Streptococcus pneumoniae Rx1

39.416

99.275

0.391
  ssbB/cilA Streptococcus pneumoniae D39

39.416

99.275

0.391
  ssbA Streptococcus mutans UA159

36.496

99.275

0.362