Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AWN91_RS01510 Genome accession   NZ_CP121209
Coordinates   335274..335600 (-) Length   108 a.a.
NCBI ID   WP_004918852.1    Uniprot ID   E4T910
Organism   Riemerella anatipestifer strain RCAD0125     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 330274..340600
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AWN91_RS01500 (AWN91_001500) - 332815..333129 (+) 315 WP_013446767.1 DUF4286 family protein -
  AWN91_RS01505 (AWN91_001505) gyrB 333255..335189 (+) 1935 WP_004918853.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  AWN91_RS01510 (AWN91_001510) ssb 335274..335600 (-) 327 WP_004918852.1 single-stranded DNA-binding protein Machinery gene
  AWN91_RS01515 (AWN91_001515) - 336035..336481 (+) 447 WP_004918851.1 hypothetical protein -
  AWN91_RS01520 (AWN91_001520) - 336629..336976 (+) 348 WP_004918849.1 hypothetical protein -
  AWN91_RS01525 (AWN91_001525) - 336980..338056 (-) 1077 WP_004918847.1 tyrosine-type recombinase/integrase -
  AWN91_RS01530 (AWN91_001530) - 338069..338272 (-) 204 WP_013446770.1 DUF2007 domain-containing protein -
  AWN91_RS01535 (AWN91_001535) - 338350..339531 (+) 1182 WP_004918842.1 acyl-CoA dehydrogenase family protein -
  AWN91_RS01540 (AWN91_001540) - 339561..339836 (+) 276 WP_004918841.1 hypothetical protein -
  AWN91_RS01545 (AWN91_001545) - 339852..340559 (+) 708 WP_004918839.1 CoA transferase subunit A -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12198.96 Da        Isoelectric Point: 9.2704

>NTDB_id=736473 AWN91_RS01510 WP_004918852.1 335274..335600(-) (ssb) [Riemerella anatipestifer strain RCAD0125]
MKNKVQLIGNVGNTPEIKEVNNTKVAHLSIATNEIYKNAQGERIEQTEWHKVVAWGGLAEIIEKYVTKGKEIAVEGKLTY
RSYDDKEGNKRYVTEIIANDILLLGRAK

Nucleotide


Download         Length: 327 bp        

>NTDB_id=736473 AWN91_RS01510 WP_004918852.1 335274..335600(-) (ssb) [Riemerella anatipestifer strain RCAD0125]
ATGAAAAACAAGGTTCAACTTATTGGTAATGTGGGTAACACGCCAGAAATTAAAGAGGTTAATAATACTAAAGTAGCTCA
TCTTTCTATAGCTACTAACGAAATTTACAAAAATGCACAAGGAGAGAGGATAGAGCAGACAGAATGGCATAAAGTGGTGG
CTTGGGGAGGACTAGCAGAAATTATAGAAAAGTATGTTACCAAAGGTAAAGAGATAGCTGTTGAGGGGAAGTTAACCTAC
CGAAGTTATGATGATAAAGAAGGAAATAAACGCTATGTTACCGAAATTATAGCTAATGATATCCTGCTTTTGGGAAGAGC
TAAATAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(3-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB E4T910

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

42.478

100

0.444
  ssbB/cilA Streptococcus pneumoniae TIGR4

43.81

97.222

0.426
  ssbB/cilA Streptococcus pneumoniae D39

42.857

97.222

0.417
  ssbB/cilA Streptococcus pneumoniae Rx1

42.857

97.222

0.417
  ssbB/cilA Streptococcus pneumoniae R6

42.857

97.222

0.417
  ssbB/cilA Streptococcus mitis NCTC 12261

42.857

97.222

0.417
  ssbB/cilA Streptococcus mitis SK321

42.857

97.222

0.417
  ssb Glaesserella parasuis strain SC1401

42.308

96.296

0.407
  ssbB Streptococcus sobrinus strain NIDR 6715-7

40.952

97.222

0.398
  ssbA Streptococcus mutans UA159

39.048

97.222

0.38
  ssb Neisseria meningitidis MC58

39.423

96.296

0.38
  ssb Neisseria gonorrhoeae MS11

39.423

96.296

0.38
  ssbB Lactococcus lactis subsp. cremoris KW2

40.625

88.889

0.361