Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   LLE29_RS11065 Genome accession   NZ_CP106780
Coordinates   2099603..2100097 (-) Length   164 a.a.
NCBI ID   WP_263055798.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 10794     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2094603..2105097
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLE29_RS11045 (LLE29_11045) - 2094645..2095127 (+) 483 WP_003694396.1 CinA family protein -
  LLE29_RS11050 (LLE29_11050) msrAB 2095211..2096779 (-) 1569 WP_003694393.1 bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB -
  LLE29_RS11055 (LLE29_11055) pilA 2096925..2098178 (+) 1254 WP_003687004.1 signal recognition particle-docking protein FtsY Machinery gene
  LLE29_RS11060 (LLE29_11060) - 2098444..2099125 (-) 682 Protein_2131 opacity family porin -
  LLE29_RS11065 (LLE29_11065) pilE 2099603..2100097 (-) 495 WP_263055798.1 pilin Machinery gene
  LLE29_RS11070 (LLE29_11070) - 2100460..2100915 (-) 456 Protein_2133 pilin -
  LLE29_RS11075 (LLE29_11075) pilE 2101452..2101865 (-) 414 WP_260240054.1 pilin Machinery gene
  LLE29_RS11080 (LLE29_11080) lpxC 2101971..2102894 (-) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  LLE29_RS11090 (LLE29_11090) - 2103386..2103742 (-) 357 Protein_2136 pilin -
  LLE29_RS11095 (LLE29_11095) - 2103783..2103998 (-) 216 Protein_2137 pilin -
  LLE29_RS11100 (LLE29_11100) - 2104371..2104502 (-) 132 WP_010356054.1 hypothetical protein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 17756.17 Da        Isoelectric Point: 7.1337

>NTDB_id=735010 LLE29_RS11065 WP_263055798.1 2099603..2100097(-) (pilE) [Neisseria gonorrhoeae strain 10794]
MNTLQKGFTLIELMIVIAIVGILAAVALPAYQDYTARAQVSEAILLAEGQKSAVTEYYLNHGEWPENNDKAGVASASDIK
GKYVEKVEVKNGVVTAQMKPSGVNKEIQGKRLSLWARREAGSVKWFCGQPVTRDAGNDTVANDATNAIDTKHLPSTCRDT
SMTN

Nucleotide


Download         Length: 495 bp        

>NTDB_id=735010 LLE29_RS11065 WP_263055798.1 2099603..2100097(-) (pilE) [Neisseria gonorrhoeae strain 10794]
ATGAATACCCTTCAAAAAGGCTTTACCCTTATCGAGCTGATGATTGTGATCGCCATCGTCGGCATTTTGGCGGCAGTCGC
CCTTCCCGCCTACCAAGACTACACCGCCCGCGCGCAAGTTTCCGAAGCCATCCTTTTGGCCGAAGGTCAAAAATCAGCCG
TCACCGAGTATTACCTGAATCACGGCGAATGGCCGGAAAACAACGACAAGGCCGGCGTGGCATCCGCCTCCGACATCAAA
GGCAAATATGTTGAGAAAGTTGAAGTCAAAAACGGCGTCGTTACCGCCCAAATGAAACCAAGCGGCGTAAACAAAGAAAT
CCAAGGCAAAAGACTCTCCCTGTGGGCCAGGCGTGAAGCCGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTACGCGCG
ACGCCGGCAACGACACCGTTGCCAACGACGCCACCAACGCCATCGACACCAAGCACCTGCCGTCAACCTGCCGCGATACG
TCAATGACAAATTAG

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(36-158)

Prokaryotic N-terminal methylation motif (N_methyl)

(5-28)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae MS11

84.568

98.78

0.835
  pilE Neisseria gonorrhoeae strain FA1090

83.851

98.171

0.823
  pilA/pilA1 Eikenella corrodens VA1

37.209

100

0.39
  pilE Neisseria elongata subsp. glycolytica ATCC 29315

33.511

100

0.384
  comP Acinetobacter baylyi ADP1

37.576

100

0.378