Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   LLE29_RS11075 Genome accession   NZ_CP106780
Coordinates   2101452..2101865 (-) Length   137 a.a.
NCBI ID   WP_260240054.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 10794     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2096452..2106865
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLE29_RS11055 (LLE29_11055) pilA 2096925..2098178 (+) 1254 WP_003687004.1 signal recognition particle-docking protein FtsY Machinery gene
  LLE29_RS11060 (LLE29_11060) - 2098444..2099125 (-) 682 Protein_2131 opacity family porin -
  LLE29_RS11065 (LLE29_11065) pilE 2099603..2100097 (-) 495 WP_263055798.1 pilin Machinery gene
  LLE29_RS11070 (LLE29_11070) - 2100460..2100915 (-) 456 Protein_2133 pilin -
  LLE29_RS11075 (LLE29_11075) pilE 2101452..2101865 (-) 414 WP_260240054.1 pilin Machinery gene
  LLE29_RS11080 (LLE29_11080) lpxC 2101971..2102894 (-) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  LLE29_RS11090 (LLE29_11090) - 2103386..2103742 (-) 357 Protein_2136 pilin -
  LLE29_RS11095 (LLE29_11095) - 2103783..2103998 (-) 216 Protein_2137 pilin -
  LLE29_RS11100 (LLE29_11100) - 2104371..2104502 (-) 132 WP_010356054.1 hypothetical protein -
  LLE29_RS11105 (LLE29_11105) - 2104584..2105272 (-) 689 Protein_2139 SprT family zinc-dependent metalloprotease -
  LLE29_RS11110 (LLE29_11110) - 2105269..2106012 (-) 744 WP_003687014.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  LLE29_RS11115 (LLE29_11115) gmhB 2106042..2106605 (-) 564 WP_003687015.1 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase -

Sequence

Protein


Download         Length: 137 a.a.        Molecular weight: 14888.67 Da        Isoelectric Point: 7.1348

>NTDB_id=735011 LLE29_RS11075 WP_260240054.1 2101452..2101865(-) (pilE) [Neisseria gonorrhoeae strain 10794]
MPTDPDSRLRGNDEAILLAEGQKSAVTEYYLNHGEWPEDNDKAGVASPDKIIGKYVKQVEVKNGVVTAEMASTGVNKEIQ
GKKLSLWAKRQAGSVKWFCGQPVKRAAKDNDTVANDATNAIDTKHLPSTCRDPFSAS

Nucleotide


Download         Length: 414 bp        

>NTDB_id=735011 LLE29_RS11075 WP_260240054.1 2101452..2101865(-) (pilE) [Neisseria gonorrhoeae strain 10794]
GTGCCGACAGACCCGGATTCCCGCCTGCGCGGGAATGACGAAGCCATCCTTTTGGCCGAAGGTCAAAAATCAGCCGTTAC
CGAGTATTACCTGAATCACGGCGAATGGCCGGAAGACAACGACAAGGCCGGCGTGGCATCCCCCGACAAAATCATAGGCA
AATATGTTAAGCAAGTTGAAGTCAAAAACGGCGTCGTCACCGCCGAAATGGCTTCAACCGGCGTAAACAAAGAAATCCAA
GGCAAAAAACTCTCCCTGTGGGCCAAGCGTCAAGCCGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTAAGCGCGCCGC
CAAAGACAACGACACCGTTGCCAACGACGCCACCAACGCCATCGACACCAAGCACCTGCCGTCAACCTGCCGCGACCCGT
TCTCTGCTAGCTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(14-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

73.188

100

0.737
  pilE Neisseria gonorrhoeae MS11

70.504

100

0.715