Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYA   Type   Machinery gene
Locus tag   NWE22_RS09525 Genome accession   NZ_CP102747
Coordinates   1876150..1877100 (-) Length   316 a.a.
NCBI ID   WP_277745466.1    Uniprot ID   -
Organism   Streptococcus parasuis strain SFJ45     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1871150..1882100
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NWE22_RS09485 (NWE22_09485) - 1871153..1872340 (-) 1188 WP_277745461.1 acetate kinase -
  NWE22_RS09490 (NWE22_09490) comYH 1872390..1873343 (-) 954 WP_277745462.1 class I SAM-dependent methyltransferase Machinery gene
  NWE22_RS09495 (NWE22_09495) comGG 1873363..1873863 (-) 501 WP_277745463.1 competence type IV pilus minor pilin ComGG -
  NWE22_RS09500 (NWE22_09500) comYF 1873841..1874275 (-) 435 WP_277745464.1 competence type IV pilus minor pilin ComGF Machinery gene
  NWE22_RS09505 (NWE22_09505) comGE 1874262..1874555 (-) 294 WP_105126461.1 competence type IV pilus minor pilin ComGE -
  NWE22_RS09510 (NWE22_09510) comGD 1874527..1874931 (-) 405 WP_160864045.1 competence type IV pilus minor pilin ComGD -
  NWE22_RS09515 (NWE22_09515) comYC 1874921..1875199 (-) 279 WP_277745465.1 competence type IV pilus major pilin ComGC Machinery gene
  NWE22_RS09520 (NWE22_09520) comYB 1875201..1876238 (-) 1038 WP_171989705.1 competence type IV pilus assembly protein ComGB Machinery gene
  NWE22_RS09525 (NWE22_09525) comYA 1876150..1877100 (-) 951 WP_277745466.1 competence type IV pilus ATPase ComGA Machinery gene
  NWE22_RS09530 (NWE22_09530) - 1877188..1878138 (+) 951 WP_216806334.1 S66 peptidase family protein -
  NWE22_RS09535 (NWE22_09535) - 1878171..1878539 (-) 369 WP_171989702.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 35570.67 Da        Isoelectric Point: 5.7230

>NTDB_id=718719 NWE22_RS09525 WP_277745466.1 1876150..1877100(-) (comYA) [Streptococcus parasuis strain SFJ45]
MIQEKARKMIEEAVVERVSDIYLIPRGENYQVYHRIMDEREYIQELAEDEVMAIISHFKFLAGLNVGEKRRCQQGSCDYN
YVSGEISLRLSTVGDYRGKESLVIRLLYDQDQQLKFWFGALERIAQEIKGRGLYLFSGPVGSGKTTLMYQLARLKFPDKQ
ILTIEDPVEIKQEDMLQLQLNEAIGATYDNLIKLSLRHRPDLLIIGEIRDAETARAVIRASLTGATVFSTVHARSVAGVY
ARMLELGVSPEELNNALQGIAYQRLIGGGGVVDFAKGNYQNHSSDKWNEQIECLLAAGHISPRQAETEKIVLGSTA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=718719 NWE22_RS09525 WP_277745466.1 1876150..1877100(-) (comYA) [Streptococcus parasuis strain SFJ45]
ATGATTCAAGAAAAAGCAAGAAAAATGATTGAAGAGGCAGTTGTCGAAAGGGTCAGTGATATTTATTTGATTCCAAGAGG
AGAAAACTACCAAGTCTATCATCGAATAATGGATGAACGGGAATATATTCAAGAATTAGCCGAGGATGAGGTGATGGCCA
TTATTAGCCATTTCAAGTTTTTAGCGGGTTTGAATGTCGGTGAAAAACGGCGTTGCCAGCAAGGCTCTTGTGACTACAAT
TATGTTTCAGGGGAGATTTCCCTTCGGTTATCAACGGTTGGTGATTATCGTGGTAAAGAAAGTTTGGTCATTCGTCTGCT
CTATGATCAAGATCAACAACTTAAATTTTGGTTTGGAGCATTGGAGAGGATTGCTCAAGAAATCAAGGGACGAGGGCTCT
ATCTTTTTTCAGGGCCGGTCGGTTCTGGCAAGACTACACTCATGTACCAGCTGGCGAGATTGAAATTTCCAGATAAGCAA
ATTCTAACTATAGAAGATCCAGTGGAAATCAAGCAGGAAGATATGCTCCAACTCCAGCTCAATGAGGCAATTGGTGCTAC
CTATGATAATCTCATCAAACTATCACTTCGTCATCGACCAGATTTACTGATTATTGGAGAAATTCGAGATGCAGAAACTG
CTCGGGCAGTAATTCGAGCTAGTTTGACAGGGGCAACGGTCTTCTCAACGGTTCATGCTAGAAGTGTTGCTGGTGTCTAT
GCTCGCATGTTAGAACTGGGTGTAAGTCCTGAAGAATTGAATAATGCTCTTCAAGGAATTGCCTATCAACGATTAATAGG
GGGAGGAGGTGTTGTTGATTTTGCAAAAGGAAACTACCAAAACCATTCCTCGGACAAGTGGAATGAGCAAATTGAATGCC
TTCTTGCAGCGGGACATATCAGTCCTCGGCAGGCAGAAACAGAAAAAATTGTCCTTGGTTCGACAGCGTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(8-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYA Streptococcus gordonii str. Challis substr. CH1

68.065

98.101

0.668
  comYA Streptococcus mutans UA159

67.846

98.418

0.668
  comYA Streptococcus mutans UA140

67.846

98.418

0.668
  comGA/cglA/cilD Streptococcus pneumoniae D39

64.839

98.101

0.636
  comGA/cglA/cilD Streptococcus pneumoniae Rx1

64.839

98.101

0.636
  comGA/cglA/cilD Streptococcus pneumoniae R6

64.839

98.101

0.636
  comGA/cglA/cilD Streptococcus pneumoniae TIGR4

64.839

98.101

0.636
  comGA/cglA/cilD Streptococcus mitis NCTC 12261

64.516

98.101

0.633
  comGA/cglA Streptococcus sobrinus strain NIDR 6715-7

64.516

98.101

0.633
  comGA Lactococcus lactis subsp. cremoris KW2

54.89

100

0.551
  comGA Latilactobacillus sakei subsp. sakei 23K

41.877

87.658

0.367