Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   NWE22_RS09490 Genome accession   NZ_CP102747
Coordinates   1872390..1873343 (-) Length   317 a.a.
NCBI ID   WP_277745462.1    Uniprot ID   -
Organism   Streptococcus parasuis strain SFJ45     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1867390..1878343
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NWE22_RS09465 (NWE22_09465) - 1867433..1867717 (-) 285 WP_171989715.1 DUF4651 domain-containing protein -
  NWE22_RS09470 (NWE22_09470) pepA 1867930..1868991 (+) 1062 WP_277745459.1 glutamyl aminopeptidase -
  NWE22_RS09475 (NWE22_09475) - 1869036..1870292 (-) 1257 WP_277745460.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  NWE22_RS09480 (NWE22_09480) - 1870347..1870898 (-) 552 WP_216806342.1 folate family ECF transporter S component -
  NWE22_RS09485 (NWE22_09485) - 1871153..1872340 (-) 1188 WP_277745461.1 acetate kinase -
  NWE22_RS09490 (NWE22_09490) comYH 1872390..1873343 (-) 954 WP_277745462.1 class I SAM-dependent methyltransferase Machinery gene
  NWE22_RS09495 (NWE22_09495) comGG 1873363..1873863 (-) 501 WP_277745463.1 competence type IV pilus minor pilin ComGG -
  NWE22_RS09500 (NWE22_09500) comYF 1873841..1874275 (-) 435 WP_277745464.1 competence type IV pilus minor pilin ComGF Machinery gene
  NWE22_RS09505 (NWE22_09505) comGE 1874262..1874555 (-) 294 WP_105126461.1 competence type IV pilus minor pilin ComGE -
  NWE22_RS09510 (NWE22_09510) comGD 1874527..1874931 (-) 405 WP_160864045.1 competence type IV pilus minor pilin ComGD -
  NWE22_RS09515 (NWE22_09515) comYC 1874921..1875199 (-) 279 WP_277745465.1 competence type IV pilus major pilin ComGC Machinery gene
  NWE22_RS09520 (NWE22_09520) comYB 1875201..1876238 (-) 1038 WP_171989705.1 competence type IV pilus assembly protein ComGB Machinery gene
  NWE22_RS09525 (NWE22_09525) comYA 1876150..1877100 (-) 951 WP_277745466.1 competence type IV pilus ATPase ComGA Machinery gene
  NWE22_RS09530 (NWE22_09530) - 1877188..1878138 (+) 951 WP_216806334.1 S66 peptidase family protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35552.76 Da        Isoelectric Point: 4.6245

>NTDB_id=718715 NWE22_RS09490 WP_277745462.1 1872390..1873343(-) (comYH) [Streptococcus parasuis strain SFJ45]
MKYEKIEQAYNLLLENVQTIQNQLGTNIYDAMIEQNAAYVAGQHETELVLNNNQVLRELALTKEEWRRAYQFLLIKANQT
EPMQYNHQFTPDSIGFILSFLVDQLVSTPRVTVLEIGSGTGNLAQTILNASQKELDYLGIEIDDLLIDLSASIADVMGAA
ISFAQGDAVRPQILKESQVILGDLPIGYYPDDQIASRYQVASPNAHTYAHHLLMEQSLKYLEKDGFAILLAPNDLLTSPQ
SDLLKGWLQEQANIVAMIALPPNLFGKAAMAKSIFVLQKKAARPLTPFVYPLQSLQEPEAIQKFMVNFKNWKQENAI

Nucleotide


Download         Length: 954 bp        

>NTDB_id=718715 NWE22_RS09490 WP_277745462.1 1872390..1873343(-) (comYH) [Streptococcus parasuis strain SFJ45]
ATGAAATATGAAAAAATTGAACAGGCCTACAACCTGCTTTTAGAAAATGTACAGACAATTCAAAATCAACTTGGGACCAA
TATTTATGATGCTATGATTGAGCAAAATGCTGCCTATGTAGCTGGTCAACATGAAACCGAACTTGTTCTCAACAACAATC
AAGTCTTGAGAGAATTAGCCTTGACAAAGGAAGAATGGCGTCGTGCTTACCAATTCTTGCTCATTAAAGCTAACCAGACA
GAACCGATGCAGTACAACCATCAGTTCACACCTGACTCTATCGGATTTATCTTATCTTTCCTTGTGGACCAGTTGGTCTC
TACTCCAAGAGTGACGGTTTTGGAAATTGGTTCTGGTACAGGAAACTTAGCTCAGACCATTCTCAACGCCAGCCAGAAGG
AATTAGACTATTTAGGGATTGAAATAGATGACCTCTTGATTGATTTATCAGCTAGTATTGCGGATGTCATGGGAGCAGCT
ATTTCATTTGCTCAGGGAGATGCAGTACGTCCGCAGATTTTGAAAGAAAGCCAAGTGATTTTGGGAGATTTGCCTATTGG
CTACTATCCAGATGACCAGATTGCTAGCCGTTATCAGGTAGCCAGTCCAAATGCACATACCTACGCACATCATTTGCTCA
TGGAACAGTCCCTCAAATATCTGGAAAAAGATGGATTTGCGATTTTACTAGCTCCAAATGATTTATTAACGAGTCCGCAA
AGCGATTTATTAAAAGGTTGGTTACAAGAACAAGCCAATATTGTTGCTATGATTGCCCTGCCACCAAATCTTTTTGGGAA
GGCTGCCATGGCCAAGTCCATTTTTGTGTTACAAAAGAAAGCTGCCAGACCTTTAACTCCTTTCGTTTATCCTTTGCAAA
GCCTGCAAGAACCAGAAGCGATTCAGAAGTTCATGGTCAATTTCAAAAATTGGAAGCAAGAGAATGCAATTTGA

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(68-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA140

59.494

99.685

0.593
  comYH Streptococcus mutans UA159

59.177

99.685

0.59