Detailed information NTG0718718

Bioinformatically predicted

Overview

• Name: comYB
• Type: Machinery gene
• Locus tag: NWE22_RS09520
• Genome accession: NZ_CP102747
• Coordinates: 1875201..1876238 (-)
• Length: 345 a.a.
• NCBI ID: WP_171989705.1
• Uniprot ID: -
• Organism: Streptococcus parasuis strain SFJ45
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1870201..1881238

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NWE22_RS09480 (NWE22_09480)	-	1870347..1870898 (-)	552	WP_216806342.1	folate family ECF transporter S component	-
NWE22_RS09485 (NWE22_09485)	-	1871153..1872340 (-)	1188	WP_277745461.1	acetate kinase	-
NWE22_RS09490 (NWE22_09490)	comYH	1872390..1873343 (-)	954	WP_277745462.1	class I SAM-dependent methyltransferase	Machinery gene
NWE22_RS09495 (NWE22_09495)	comGG	1873363..1873863 (-)	501	WP_277745463.1	competence type IV pilus minor pilin ComGG	-
NWE22_RS09500 (NWE22_09500)	comYF	1873841..1874275 (-)	435	WP_277745464.1	competence type IV pilus minor pilin ComGF	Machinery gene
NWE22_RS09505 (NWE22_09505)	comGE	1874262..1874555 (-)	294	WP_105126461.1	competence type IV pilus minor pilin ComGE	-
NWE22_RS09510 (NWE22_09510)	comGD	1874527..1874931 (-)	405	WP_160864045.1	competence type IV pilus minor pilin ComGD	-
NWE22_RS09515 (NWE22_09515)	comYC	1874921..1875199 (-)	279	WP_277745465.1	competence type IV pilus major pilin ComGC	Machinery gene
NWE22_RS09520 (NWE22_09520)	comYB	1875201..1876238 (-)	1038	WP_171989705.1	competence type IV pilus assembly protein ComGB	Machinery gene
NWE22_RS09525 (NWE22_09525)	comYA	1876150..1877100 (-)	951	WP_277745466.1	competence type IV pilus ATPase ComGA	Machinery gene
NWE22_RS09530 (NWE22_09530)	-	1877188..1878138 (+)	951	WP_216806334.1	S66 peptidase family protein	-
NWE22_RS09535 (NWE22_09535)	-	1878171..1878539 (-)	369	WP_171989702.1	DUF1033 family protein	-

Sequence

Protein

• Length: 345 a.a.
• Molecular weight: 39299.29 Da
• Isoelectric Point: 9.4587

>NTDB_id=718718 NWE22_RS09520 WP_171989705.1 1875201..1876238(-) (comYB) [Streptococcus parasuis strain SFJ45]
MSKLNAFLQRDISVLGRQKQKKLSLVRQRKVIELFNNLFASGFHLGEIVDFLKRSQLLADQYTQVLSDGLLAGKPFSSLL
GDLRFSDAVVTQVALAEVHGNTSLSLNHIQSYLENVSKVRKKLIEVATYPIILLAFLLLIMLGLKNYLLPQLEEGNVATI
LIQHLPTIFLSFCGLFFLAVLGGLIWYRRTNKIKAFSRLVALPFFGKLIQTYLTAYYAREWGSLIGQGLDMPQIVGLMQE
QKSQLFREIGEDLERSLSDGHSFHAHIQTYGFFKRELSLMIEYGQVKSKLGSELSVYATECWEEFFTRVNRAMQLIQPLV
FLFVALMVVLIYAAMLLPIYQNMEL

Nucleotide

• Length: 1038 bp

>NTDB_id=718718 NWE22_RS09520 WP_171989705.1 1875201..1876238(-) (comYB) [Streptococcus parasuis strain SFJ45]
ATGAGCAAATTGAATGCCTTCTTGCAGCGGGACATATCAGTCCTCGGCAGGCAGAAACAGAAAAAATTGTCCTTGGTTCG
ACAGCGTAAGGTGATTGAGCTCTTTAACAATCTTTTTGCTAGTGGATTTCACTTGGGAGAAATTGTCGATTTTCTCAAAC
GGAGTCAACTCTTGGCTGACCAATACACGCAAGTTTTGTCCGACGGTCTTCTTGCAGGAAAGCCATTTTCAAGTCTTTTG
GGAGATTTACGCTTTTCGGATGCGGTTGTCACTCAGGTGGCCTTGGCGGAGGTTCATGGCAATACCAGTCTGAGTTTAAA
TCATATTCAATCTTATCTTGAAAATGTTAGCAAGGTGCGTAAAAAATTGATAGAAGTAGCAACCTATCCAATCATCTTGC
TTGCCTTTTTATTATTGATAATGTTGGGACTAAAAAACTATTTGTTGCCCCAGTTGGAAGAAGGAAATGTTGCGACTATA
TTGATTCAACACTTGCCAACAATCTTTTTATCCTTTTGTGGCCTTTTCTTTCTTGCTGTCTTAGGTGGGCTTATTTGGTA
TCGCAGAACAAATAAAATCAAGGCTTTTTCTCGCTTAGTAGCTCTGCCATTTTTCGGAAAACTCATCCAAACCTATTTGA
CCGCCTATTACGCGAGGGAGTGGGGAAGCTTGATTGGTCAGGGACTTGATATGCCTCAGATTGTGGGCTTGATGCAGGAA
CAAAAATCACAGCTTTTTCGTGAGATTGGTGAAGATTTAGAGCGTTCGCTTTCTGATGGGCATAGTTTCCATGCTCATAT
CCAAACGTATGGCTTTTTCAAACGGGAGCTGAGTCTAATGATTGAGTATGGGCAAGTCAAATCAAAATTAGGAAGTGAGC
TATCTGTGTATGCAACAGAGTGTTGGGAGGAATTTTTTACTCGTGTTAATAGGGCCATGCAGTTGATTCAACCATTGGTT
TTTCTCTTTGTGGCCTTAATGGTCGTTCTCATCTATGCAGCCATGTTGCTGCCAATTTATCAGAATATGGAGTTATAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (218-338)

• Type II secretion system (T2SS), protein F (T2SSF) (33-150)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYB	Streptococcus gordonii str. Challis substr. CH1	60.588	98.551	0.597
comYB	Streptococcus mutans UA140	60	98.551	0.591
comYB	Streptococcus mutans UA159	60	98.551	0.591
comGB/cglB	Streptococcus mitis SK321	60	97.101	0.583
comGB/cglB	Streptococcus mitis NCTC 12261	59.701	97.101	0.58
comGB/cglB	Streptococcus pneumoniae Rx1	59.104	97.101	0.574
comGB/cglB	Streptococcus pneumoniae D39	59.104	97.101	0.574
comGB/cglB	Streptococcus pneumoniae R6	59.104	97.101	0.574
comGB/cglB	Streptococcus pneumoniae TIGR4	59.104	97.101	0.574
comGB	Lactococcus lactis subsp. cremoris KW2	51.335	97.681	0.501