Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | VCA1004_RS09615 | Genome accession | NZ_AP018689 |
| Coordinates | 2118017..2118475 (+) | Length | 152 a.a. |
| NCBI ID | WP_086981567.1 | Uniprot ID | - |
| Organism | Vibrio aphrogenes strain CA-1004 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2113017..2123475
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| VCA1004_RS09600 | nhaC | 2113856..2115331 (-) | 1476 | WP_086981564.1 | Na+/H+ antiporter NhaC | - |
| VCA1004_RS09605 | - | 2115450..2116454 (-) | 1005 | WP_086981565.1 | LacI family DNA-binding transcriptional regulator | - |
| VCA1004_RS09610 | nadC | 2116701..2117621 (+) | 921 | WP_086981566.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| VCA1004_RS09615 | pilA | 2118017..2118475 (+) | 459 | WP_086981567.1 | pilin | Machinery gene |
| VCA1004_RS09620 | pilB | 2118475..2120163 (+) | 1689 | WP_086981568.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| VCA1004_RS09625 | pilC | 2120199..2121431 (+) | 1233 | WP_086981569.1 | type II secretion system F family protein | Machinery gene |
| VCA1004_RS09630 | pilD | 2121469..2122362 (+) | 894 | WP_086981570.1 | A24 family peptidase | Machinery gene |
| VCA1004_RS09635 | coaE | 2122366..2122989 (+) | 624 | WP_086981571.1 | dephospho-CoA kinase | - |
Sequence
Protein
Download Length: 152 a.a. Molecular weight: 15574.96 Da Isoelectric Point: 9.0866
>NTDB_id=70408 VCA1004_RS09615 WP_086981567.1 2118017..2118475(+) (pilA) [Vibrio aphrogenes strain CA-1004]
MKPLQQSKKTLQQGFTLIELMIVVAVIGVLAAIAIPQYQNYVKKAELGSALATIAALKINMEDGIASTGSFPNYSSSQLG
VSSSLGTITSAPGTGASAAGAIILNLGSKSQFTGKKIALVRDADGIWDCESTVSASVNILPRGCQSVGSITN
MKPLQQSKKTLQQGFTLIELMIVVAVIGVLAAIAIPQYQNYVKKAELGSALATIAALKINMEDGIASTGSFPNYSSSQLG
VSSSLGTITSAPGTGASAAGAIILNLGSKSQFTGKKIALVRDADGIWDCESTVSASVNILPRGCQSVGSITN
Nucleotide
Download Length: 459 bp
>NTDB_id=70408 VCA1004_RS09615 WP_086981567.1 2118017..2118475(+) (pilA) [Vibrio aphrogenes strain CA-1004]
ATGAAACCATTACAACAAAGTAAGAAGACACTACAGCAAGGTTTTACGTTAATTGAATTAATGATCGTAGTGGCAGTGAT
TGGTGTGCTGGCTGCGATTGCAATTCCGCAATATCAAAATTATGTAAAGAAAGCTGAACTAGGTTCTGCCCTTGCTACAA
TTGCGGCTTTAAAAATCAATATGGAAGATGGAATAGCTTCAACAGGCTCTTTTCCTAATTATTCAAGTTCACAATTAGGT
GTATCAAGCTCTCTTGGAACAATCACTTCAGCACCAGGCACAGGAGCCTCTGCTGCTGGAGCTATAATTTTAAACCTAGG
TTCAAAATCTCAATTTACTGGTAAAAAAATAGCTTTAGTTCGTGATGCTGATGGGATTTGGGATTGTGAAAGTACCGTAT
CTGCAAGTGTCAATATTCTTCCAAGAGGTTGTCAATCTGTAGGCTCTATTACTAACTAA
ATGAAACCATTACAACAAAGTAAGAAGACACTACAGCAAGGTTTTACGTTAATTGAATTAATGATCGTAGTGGCAGTGAT
TGGTGTGCTGGCTGCGATTGCAATTCCGCAATATCAAAATTATGTAAAGAAAGCTGAACTAGGTTCTGCCCTTGCTACAA
TTGCGGCTTTAAAAATCAATATGGAAGATGGAATAGCTTCAACAGGCTCTTTTCCTAATTATTCAAGTTCACAATTAGGT
GTATCAAGCTCTCTTGGAACAATCACTTCAGCACCAGGCACAGGAGCCTCTGCTGCTGGAGCTATAATTTTAAACCTAGG
TTCAAAATCTCAATTTACTGGTAAAAAAATAGCTTTAGTTCGTGATGCTGATGGGATTTGGGATTGTGAAAGTACCGTAT
CTGCAAGTGTCAATATTCTTCCAAGAGGTTGTCAATCTGTAGGCTCTATTACTAACTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio cholerae strain A1552 |
48.387 |
100 |
0.493 |
| pilA | Vibrio cholerae C6706 |
48.387 |
100 |
0.493 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
48.387 |
100 |
0.493 |
| pilA | Pseudomonas aeruginosa PAK |
42.568 |
97.368 |
0.414 |
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
42.282 |
98.026 |
0.414 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
43.478 |
90.789 |
0.395 |
| pilA | Acinetobacter baumannii strain A118 |
41.176 |
89.474 |
0.368 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
41.985 |
86.184 |
0.362 |
| comP | Acinetobacter baylyi ADP1 |
37.671 |
96.053 |
0.362 |