Detailed information NTG0070410

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: VCA1004_RS09625
• Genome accession: NZ_AP018689
• Coordinates: 2120199..2121431 (+)
• Length: 410 a.a.
• NCBI ID: WP_086981569.1
• Uniprot ID: -
• Organism: Vibrio aphrogenes strain CA-1004
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2115199..2126431

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VCA1004_RS09605	-	2115450..2116454 (-)	1005	WP_086981565.1	LacI family DNA-binding transcriptional regulator	-
VCA1004_RS09610	nadC	2116701..2117621 (+)	921	WP_086981566.1	carboxylating nicotinate-nucleotide diphosphorylase	-
VCA1004_RS09615	pilA	2118017..2118475 (+)	459	WP_086981567.1	pilin	Machinery gene
VCA1004_RS09620	pilB	2118475..2120163 (+)	1689	WP_086981568.1	type IV-A pilus assembly ATPase PilB	Machinery gene
VCA1004_RS09625	pilC	2120199..2121431 (+)	1233	WP_086981569.1	type II secretion system F family protein	Machinery gene
VCA1004_RS09630	pilD	2121469..2122362 (+)	894	WP_086981570.1	A24 family peptidase	Machinery gene
VCA1004_RS09635	coaE	2122366..2122989 (+)	624	WP_086981571.1	dephospho-CoA kinase	-
VCA1004_RS09640	zapD	2123035..2123766 (+)	732	WP_086981572.1	cell division protein ZapD	-
VCA1004_RS09645	yacG	2123806..2124006 (+)	201	WP_086981573.1	DNA gyrase inhibitor YacG	-
VCA1004_RS09650	mutT	2124450..2124848 (-)	399	WP_086981574.1	8-oxo-dGTP diphosphatase MutT	-

Sequence

Protein

• Length: 410 a.a.
• Molecular weight: 45402.92 Da
• Isoelectric Point: 10.5219

>NTDB_id=70410 VCA1004_RS09625 WP_086981569.1 2120199..2121431(+) (pilC) [Vibrio aphrogenes strain CA-1004]
MAQTSTLKAPALKNFQWRGVNNVGKKVSGQMLAMNETEVRTKLKEQRIQIKKLKRRSVSIVAKMSHKINSKDITILTRQL
ATMTATGVPIVQALKLISDNQRKAEMKSILSQISLQIEAGTPISKAMRSASPFFDPFYCDLITTGEQTGNLADVFARLAT
YREKSEELRSKVIKAMIYPGMVILVATLVSILMLTMVIPEFEAMFRGFGAQLPWFTQQVINLSHFIQSYLFVMILAVIIV
ILGLKEARKRSFNIRLKTSRFALKIPVLGGVFSKAAIAKFSRTLATSFSAGIPILSSLLTTAKTAGNLHYQVAIEQVHRD
TAAGMPMYIAMRNAEAFPEMVLQMVMIGEESGNLDDMLNKVAAIYEFEVDNTVDNLGKIIEPAIIVFLGVIVGGLVVSLY
LPIFKLVSVF

Nucleotide

• Length: 1233 bp

>NTDB_id=70410 VCA1004_RS09625 WP_086981569.1 2120199..2121431(+) (pilC) [Vibrio aphrogenes strain CA-1004]
ATGGCACAAACATCGACACTAAAAGCCCCCGCTTTAAAGAACTTTCAATGGCGCGGAGTAAATAATGTAGGCAAAAAAGT
CTCCGGACAAATGCTGGCGATGAATGAAACGGAAGTGCGTACTAAGTTAAAAGAGCAAAGAATTCAAATAAAAAAGCTCA
AACGTCGTAGCGTCTCGATAGTGGCTAAAATGAGCCATAAGATAAATAGCAAAGATATCACCATATTAACCCGTCAATTA
GCTACCATGACGGCCACAGGCGTCCCCATAGTACAAGCTTTAAAACTGATCTCAGATAACCAACGTAAAGCAGAAATGAA
ATCGATCTTATCGCAAATTAGCCTTCAGATTGAAGCCGGGACTCCGATTTCAAAGGCCATGCGCTCGGCGAGCCCGTTCT
TTGACCCTTTTTATTGCGATCTTATTACCACCGGTGAGCAAACGGGTAATTTGGCCGATGTGTTTGCCCGCCTTGCGACA
TATAGAGAAAAAAGTGAAGAATTACGCTCTAAGGTGATCAAAGCGATGATCTACCCAGGCATGGTGATCCTGGTCGCCAC
CCTGGTCTCCATCTTAATGCTAACCATGGTCATCCCTGAATTTGAAGCCATGTTTCGAGGATTTGGCGCCCAATTACCTT
GGTTTACGCAACAGGTGATCAACCTTTCTCACTTTATTCAAAGTTATCTCTTTGTCATGATACTAGCCGTCATCATTGTG
ATTCTAGGACTAAAAGAAGCCCGTAAACGATCGTTTAATATCCGTTTAAAAACCAGCCGCTTCGCATTAAAGATACCGGT
ATTAGGCGGTGTTTTTTCTAAGGCCGCCATTGCTAAATTTAGCCGTACCTTAGCCACCAGCTTTAGTGCCGGAATTCCTA
TTCTAAGTAGCTTATTAACGACAGCCAAAACCGCAGGAAATTTACATTATCAAGTCGCGATTGAACAAGTACATCGAGAT
ACTGCCGCGGGGATGCCCATGTACATCGCCATGCGTAATGCAGAAGCTTTTCCTGAAATGGTGTTACAAATGGTCATGAT
CGGCGAAGAGTCAGGAAACTTAGACGATATGCTCAATAAGGTGGCTGCTATTTATGAATTTGAAGTCGATAACACCGTCG
ATAACCTAGGTAAAATTATTGAACCTGCGATTATTGTGTTTCTTGGCGTCATAGTTGGTGGGCTTGTTGTCTCACTTTAC
CTGCCAATCTTTAAGCTAGTTAGTGTATTCTAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (280-402)

• Type II secretion system (T2SS), protein F (T2SSF) (77-199)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Vibrio cholerae strain A1552	71.707	100	0.717
pilC	Vibrio campbellii strain DS40M4	67.164	98.049	0.659
pilC	Acinetobacter baumannii D1279779	42.432	98.293	0.417
pilC	Acinetobacter baylyi ADP1	42.172	96.585	0.407
pilG	Neisseria gonorrhoeae MS11	39.216	99.512	0.39
pilC	Legionella pneumophila strain ERS1305867	39.75	97.561	0.388
pilC	Pseudomonas stutzeri DSM 10701	39.401	97.805	0.385
pilG	Neisseria meningitidis 44/76-A	38.725	99.512	0.385