Detailed information
Bioinformatically predicted
Overview
| Name | pilA/pilAI | Type | Machinery gene |
| Locus tag | NG828_RS05790 | Genome accession | NZ_CP099530 |
| Coordinates | 1356115..1356507 (+) | Length | 130 a.a. |
| NCBI ID | WP_017910395.1 | Uniprot ID | - |
| Organism | Xanthomonas sacchari strain YT9-19-2 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Genomic island | 1343390..1362790 | 1356115..1356507 | within | 0 |
Gene organization within MGE regions
Location: 1343390..1362790
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NG828_RS05740 (NG828_05725) | - | 1343390..1344010 (-) | 621 | WP_148828482.1 | histidine phosphatase family protein | - |
| NG828_RS05745 (NG828_05730) | - | 1344226..1346250 (+) | 2025 | WP_230979387.1 | phospholipase C, phosphocholine-specific | - |
| NG828_RS05750 (NG828_05735) | - | 1346660..1348969 (-) | 2310 | WP_267082996.1 | TonB-dependent receptor | - |
| NG828_RS05755 (NG828_05740) | rimK | 1349245..1350138 (+) | 894 | WP_026143298.1 | 30S ribosomal protein S6--L-glutamate ligase | - |
| NG828_RS05760 (NG828_05745) | - | 1350402..1350848 (+) | 447 | WP_223875524.1 | hypothetical protein | - |
| NG828_RS05765 (NG828_05750) | - | 1350863..1351540 (+) | 678 | WP_010340533.1 | response regulator transcription factor | - |
| NG828_RS05770 (NG828_05755) | - | 1351533..1352867 (+) | 1335 | WP_148828478.1 | HAMP domain-containing sensor histidine kinase | - |
| NG828_RS05775 (NG828_05760) | coaE | 1352978..1353607 (-) | 630 | WP_150409182.1 | dephospho-CoA kinase | - |
| NG828_RS05780 (NG828_05765) | - | 1353621..1354484 (-) | 864 | WP_017910397.1 | A24 family peptidase | - |
| NG828_RS05785 (NG828_05770) | pilC | 1354491..1355750 (-) | 1260 | WP_153751114.1 | type II secretion system F family protein | Machinery gene |
| NG828_RS05790 (NG828_05775) | pilA/pilAI | 1356115..1356507 (+) | 393 | WP_017910395.1 | pilin | Machinery gene |
| NG828_RS05800 (NG828_05785) | - | 1356614..1357039 (+) | 426 | WP_148828475.1 | pilin | - |
| NG828_RS05805 (NG828_05790) | - | 1357068..1358906 (+) | 1839 | WP_153751090.1 | hypothetical protein | - |
| NG828_RS05810 (NG828_05795) | - | 1358991..1360124 (-) | 1134 | WP_267082997.1 | glycosyltransferase | - |
| NG828_RS05815 (NG828_05800) | - | 1360175..1361125 (-) | 951 | WP_267082998.1 | YbhN family protein | - |
| NG828_RS05820 (NG828_05805) | - | 1361122..1361910 (-) | 789 | WP_153751087.1 | class I SAM-dependent methyltransferase | - |
| NG828_RS05825 (NG828_05810) | - | 1361933..1362790 (-) | 858 | WP_267082999.1 | glycosyltransferase family 2 protein | - |
Sequence
Protein
Download Length: 130 a.a. Molecular weight: 13476.66 Da Isoelectric Point: 9.5775
>NTDB_id=700415 NG828_RS05790 WP_017910395.1 1356115..1356507(+) (pilA/pilAI) [Xanthomonas sacchari strain YT9-19-2]
MKKQQGFTLIELMIVVAIIAILAAIALPMYQDYVAKSQATAGLAEITPGKTQFEVKKNEGSTLSTPAQIGLASSTTRCSI
AVTDTTIACTLKGNAAKIAGKNVTLTRTASTGTWACSSSVDAKYKPTGCS
MKKQQGFTLIELMIVVAIIAILAAIALPMYQDYVAKSQATAGLAEITPGKTQFEVKKNEGSTLSTPAQIGLASSTTRCSI
AVTDTTIACTLKGNAAKIAGKNVTLTRTASTGTWACSSSVDAKYKPTGCS
Nucleotide
Download Length: 393 bp
>NTDB_id=700415 NG828_RS05790 WP_017910395.1 1356115..1356507(+) (pilA/pilAI) [Xanthomonas sacchari strain YT9-19-2]
ATGAAGAAGCAGCAGGGCTTTACCCTGATCGAACTGATGATCGTGGTCGCGATCATCGCCATCCTGGCCGCCATCGCGCT
GCCGATGTATCAGGACTACGTCGCCAAGTCGCAGGCCACCGCTGGTCTGGCCGAAATCACCCCGGGCAAGACCCAGTTCG
AGGTGAAGAAGAACGAGGGTAGCACCCTCAGCACGCCGGCCCAGATCGGTTTGGCCTCGAGCACGACCCGTTGCAGCATC
GCCGTGACCGACACCACGATTGCCTGCACCCTGAAGGGCAATGCGGCCAAGATCGCTGGCAAGAACGTTACGCTGACCCG
TACGGCCAGCACCGGTACCTGGGCTTGCAGCTCGTCGGTCGACGCCAAGTACAAGCCGACCGGCTGCAGCTGA
ATGAAGAAGCAGCAGGGCTTTACCCTGATCGAACTGATGATCGTGGTCGCGATCATCGCCATCCTGGCCGCCATCGCGCT
GCCGATGTATCAGGACTACGTCGCCAAGTCGCAGGCCACCGCTGGTCTGGCCGAAATCACCCCGGGCAAGACCCAGTTCG
AGGTGAAGAAGAACGAGGGTAGCACCCTCAGCACGCCGGCCCAGATCGGTTTGGCCTCGAGCACGACCCGTTGCAGCATC
GCCGTGACCGACACCACGATTGCCTGCACCCTGAAGGGCAATGCGGCCAAGATCGCTGGCAAGAACGTTACGCTGACCCG
TACGGCCAGCACCGGTACCTGGGCTTGCAGCTCGTCGGTCGACGCCAAGTACAAGCCGACCGGCTGCAGCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
57.778 |
100 |
0.6 |
| pilA | Acinetobacter baumannii strain A118 |
48.921 |
100 |
0.523 |
| pilA | Pseudomonas aeruginosa PAK |
44.295 |
100 |
0.508 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
48.12 |
100 |
0.492 |
| pilA | Vibrio cholerae C6706 |
42.759 |
100 |
0.477 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
42.759 |
100 |
0.477 |
| pilA | Vibrio cholerae strain A1552 |
42.759 |
100 |
0.477 |
| comP | Acinetobacter baylyi ADP1 |
38.776 |
100 |
0.438 |
| pilA2 | Legionella pneumophila str. Paris |
38.095 |
100 |
0.431 |
| pilA/pilA1 | Eikenella corrodens VA1 |
36.913 |
100 |
0.423 |
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
42.742 |
95.385 |
0.408 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
35.417 |
100 |
0.392 |