Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   PCP36_RS14255 Genome accession   NZ_CP115227
Coordinates   3015178..3016248 (+) Length   356 a.a.
NCBI ID   WP_174215927.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain F052     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3010178..3021248
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP36_RS14235 (PCP36_14230) rsmB 3011073..3012377 (-) 1305 WP_016561456.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  PCP36_RS14240 (PCP36_14235) fmt 3012374..3013318 (-) 945 WP_003131369.1 methionyl-tRNA formyltransferase -
  PCP36_RS14245 (PCP36_14240) def 3013373..3013879 (-) 507 WP_003097293.1 peptide deformylase -
  PCP36_RS14250 (PCP36_14245) tsaP 3014018..3015043 (+) 1026 WP_003097294.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  PCP36_RS14255 (PCP36_14250) dprA 3015178..3016248 (+) 1071 WP_174215927.1 DNA-processing protein DprA Machinery gene
  PCP36_RS14260 (PCP36_14255) - 3016307..3016864 (+) 558 WP_003097300.1 L-threonylcarbamoyladenylate synthase -
  PCP36_RS14265 (PCP36_14260) - 3016874..3017851 (-) 978 WP_174215928.1 NADPH:quinone reductase -
  PCP36_RS14270 (PCP36_14265) hemF 3018042..3018959 (+) 918 WP_019681058.1 oxygen-dependent coproporphyrinogen oxidase -
  PCP36_RS14275 (PCP36_14270) aroE 3019017..3019841 (+) 825 WP_003111201.1 shikimate dehydrogenase -
  PCP36_RS14280 (PCP36_14275) - 3019952..3020938 (+) 987 WP_003111200.1 phospholipase C -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 36978.42 Da        Isoelectric Point: 6.8350

>NTDB_id=697275 PCP36_RS14255 WP_174215927.1 3015178..3016248(+) (dprA) [Pseudomonas aeruginosa strain F052]
MKNHSPAELEARLRLHGLPELGPMRFLRLIEAFGSASSALAAPAGAWRTLGVPAEAAAARRSPAVREAAGEALRWLEGPR
RHLLMWDDPGYPALLAEVADAPPLLYVEGAPETLERPQLAMVGSRRASPAGLGTARSFARSLAQGGFAITSGLALGIDGA
AHEGALEVGGATVAVLGTGLRRLYPRRHEALARRIVEGGGALVSELPLDSPPLPANFPRRNRIISGLSLGVLVVEASPAS
GSLITARLAAEQGREVYAIPGSIHHPGARGCHQLIRDGALLVESVGHVLEALRGWAQAEPAEAPAQPLPHPLLALLRAAP
YTSEGLAAASGMTLPDVLATLSELELDGRVACEAGT

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=697275 PCP36_RS14255 WP_174215927.1 3015178..3016248(+) (dprA) [Pseudomonas aeruginosa strain F052]
ATGAAGAACCATTCTCCAGCCGAACTGGAAGCACGGCTGCGCCTGCATGGCCTGCCCGAACTGGGACCCATGCGCTTCCT
GCGCTTGATCGAGGCCTTCGGTTCGGCCTCTTCCGCGCTTGCCGCGCCAGCCGGCGCCTGGCGCACCCTGGGAGTGCCTG
CCGAGGCCGCCGCCGCGCGGCGCAGCCCGGCGGTGCGGGAAGCGGCGGGTGAAGCCCTGCGCTGGCTGGAAGGTCCGCGC
AGGCACCTGCTGATGTGGGACGACCCGGGATACCCGGCACTGCTCGCCGAAGTCGCCGATGCCCCGCCGCTGCTGTACGT
CGAAGGCGCTCCGGAGACTCTGGAACGGCCGCAACTGGCGATGGTCGGCAGCCGCCGCGCCAGCCCCGCCGGGCTGGGCA
CCGCCCGGAGCTTTGCGCGCAGCCTGGCGCAGGGCGGCTTCGCCATCACCAGCGGGCTGGCCCTGGGAATCGATGGCGCC
GCCCACGAGGGCGCGCTGGAGGTTGGCGGCGCGACCGTGGCAGTCCTCGGCACCGGCCTGCGCAGGCTCTATCCGCGCCG
CCACGAGGCGCTGGCGCGGCGCATCGTCGAGGGTGGCGGCGCGCTGGTTTCGGAGCTGCCGCTGGACAGCCCGCCGCTGC
CGGCAAACTTTCCCCGGCGCAACCGCATCATCAGCGGACTCTCGCTGGGTGTGCTGGTGGTCGAGGCAAGTCCCGCCAGC
GGCTCGCTGATCACCGCGCGGCTGGCGGCGGAACAGGGGCGCGAGGTGTACGCCATTCCGGGTTCCATCCACCATCCTGG
CGCACGTGGCTGCCACCAGCTGATTCGCGATGGCGCGCTGCTGGTGGAAAGCGTCGGGCACGTGCTCGAAGCACTGCGCG
GCTGGGCGCAGGCGGAGCCAGCGGAAGCGCCGGCGCAACCCCTGCCCCACCCTTTGCTGGCGCTGCTGCGCGCCGCGCCC
TACACCAGCGAAGGCCTGGCCGCCGCCAGCGGCATGACGCTGCCCGACGTGCTGGCGACGCTCAGCGAACTGGAACTCGA
CGGCCGGGTCGCCTGCGAGGCCGGCACCTGA

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(81-283)

DprA winged helix domain (WHD_DprA)

(297-355)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

43.836

100

0.449
  dprA Legionella pneumophila strain ERS1305867

44.092

97.472

0.43
  dprA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

42.493

99.157

0.421
  dprA Vibrio cholerae strain A1552

46.535

85.112

0.396
  dprA Vibrio cholerae O1 biovar El Tor strain E7946

46.535

85.112

0.396
  dprA Acinetobacter baumannii D1279779

37.883

100

0.382
  dprA Acinetobacter baumannii strain A118

37.883

100

0.382
  dprA Glaesserella parasuis strain SC1401

46.853

80.337

0.376
  dprA Neisseria gonorrhoeae strain FA1090

44.224

85.112

0.376
  dprA Neisseria gonorrhoeae MS11

43.894

85.112

0.374
  dprA Neisseria meningitidis strain C311

45.704

81.742

0.374
  dprA Neisseria meningitidis MC58

45.704

81.742

0.374
  dprA Acinetobacter baylyi ADP1

47.253

76.685

0.362