Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   PCP36_RS14250 Genome accession   NZ_CP115227
Coordinates   3014018..3015043 (+) Length   341 a.a.
NCBI ID   WP_003097294.1    Uniprot ID   A0A0H2ZJL6
Organism   Pseudomonas aeruginosa strain F052     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3009018..3020043
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP36_RS14225 (PCP36_14220) - 3009206..3009523 (-) 318 WP_134308132.1 tetratricopeptide repeat protein -
  PCP36_RS14230 (PCP36_14225) trkA 3009672..3011045 (-) 1374 WP_003111375.1 Trk system potassium transporter TrkA -
  PCP36_RS14235 (PCP36_14230) rsmB 3011073..3012377 (-) 1305 WP_016561456.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  PCP36_RS14240 (PCP36_14235) fmt 3012374..3013318 (-) 945 WP_003131369.1 methionyl-tRNA formyltransferase -
  PCP36_RS14245 (PCP36_14240) def 3013373..3013879 (-) 507 WP_003097293.1 peptide deformylase -
  PCP36_RS14250 (PCP36_14245) tsaP 3014018..3015043 (+) 1026 WP_003097294.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  PCP36_RS14255 (PCP36_14250) dprA 3015178..3016248 (+) 1071 WP_174215927.1 DNA-processing protein DprA Machinery gene
  PCP36_RS14260 (PCP36_14255) - 3016307..3016864 (+) 558 WP_003097300.1 L-threonylcarbamoyladenylate synthase -
  PCP36_RS14265 (PCP36_14260) - 3016874..3017851 (-) 978 WP_174215928.1 NADPH:quinone reductase -
  PCP36_RS14270 (PCP36_14265) hemF 3018042..3018959 (+) 918 WP_019681058.1 oxygen-dependent coproporphyrinogen oxidase -
  PCP36_RS14275 (PCP36_14270) aroE 3019017..3019841 (+) 825 WP_003111201.1 shikimate dehydrogenase -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37586.01 Da        Isoelectric Point: 9.3358

>NTDB_id=697274 PCP36_RS14250 WP_003097294.1 3014018..3015043(+) (tsaP) [Pseudomonas aeruginosa strain F052]
MRKSLVALLLLAASGLAQAQVDLREGHPDRYTVVRGDTLWDISGKFLRQPWKWPELWHANPQIQNPHLIYPGDTLSLVYV
DGQPRLVLNRGESRGTIKLSPKIRSTPIAEAIPTIPLDKINSFLLANRIVDDEKTFTSAPYIVAGNAERIVSGTGDRIYA
RGKFADGQPAYGIFRQGKVYIDPKTKEVLGINADDIGGGEVVATEGDVATLALTRTTQEVRLGDRLFPTEERAVNSTFMP
GEPSREVKGEIIDVPRGVTQIGQFDVVTLNRGQRDGLAEGNVLAIYKVGETVRDRVTGESVKIPDERAGLLMVFRTYKKL
SYALVLMASRPLSVTDRVQNP

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=697274 PCP36_RS14250 WP_003097294.1 3014018..3015043(+) (tsaP) [Pseudomonas aeruginosa strain F052]
ATGAGGAAATCACTAGTCGCCCTTCTGCTCCTTGCCGCGAGCGGTCTGGCGCAGGCCCAGGTCGACCTCAGGGAAGGGCA
TCCGGACCGCTACACGGTGGTCAGGGGCGATACCCTGTGGGACATCTCGGGGAAATTCCTCCGCCAGCCATGGAAGTGGC
CGGAACTCTGGCACGCCAACCCGCAGATCCAGAATCCCCACCTGATCTACCCCGGCGACACACTCAGCCTGGTCTACGTC
GATGGCCAGCCGCGCCTGGTGCTGAACCGTGGCGAATCGCGCGGGACCATCAAGCTGTCGCCGAAGATCCGCAGCACGCC
GATCGCCGAGGCCATCCCGACCATCCCGCTGGACAAGATCAACAGCTTCCTGCTGGCCAACCGCATCGTCGATGACGAGA
AGACCTTCACCAGTGCGCCGTACATCGTCGCCGGCAACGCCGAGCGGATCGTCAGCGGCACCGGCGACCGCATCTATGCC
CGCGGCAAGTTCGCCGACGGCCAGCCGGCCTATGGCATCTTCCGCCAGGGCAAGGTCTACATCGATCCGAAGACCAAGGA
AGTCCTCGGCATCAACGCCGACGACATCGGCGGCGGCGAGGTGGTGGCCACCGAAGGCGACGTCGCGACCCTGGCGCTGA
CCCGCACCACCCAGGAAGTGCGCCTGGGCGACCGCCTGTTCCCCACCGAGGAGCGTGCGGTGAATTCCACCTTCATGCCC
GGCGAGCCGAGCCGCGAGGTGAAGGGCGAAATCATCGACGTACCGCGCGGCGTGACCCAGATCGGCCAGTTCGACGTGGT
CACCCTGAACCGTGGCCAGCGCGACGGGCTGGCCGAGGGCAACGTGCTGGCGATCTACAAGGTCGGCGAGACGGTGCGCG
ACCGCGTTACCGGTGAGTCGGTGAAGATTCCCGACGAACGCGCCGGCCTGCTGATGGTGTTCCGTACCTACAAGAAGCTG
AGCTACGCCCTGGTTCTGATGGCCAGCAGGCCGCTCTCGGTAACCGACAGGGTGCAGAATCCCTGA

Domains

Predicted by InterProScan.

LysM domain (LysM)

(31-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZJL6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

36.512

100

0.393