Detailed information    

insolico Bioinformatically predicted

Overview


Name   comGC/cglC   Type   Machinery gene
Locus tag   M9H69_RS01185 Genome accession   NZ_CP097843
Coordinates   213336..213659 (+) Length   107 a.a.
NCBI ID   WP_000735798.1    Uniprot ID   A0A1X1HB54
Organism   Streptococcus oralis strain HP01     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 208336..218659
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M9H69_RS01165 (M9H69_01165) nagA 209694..210845 (+) 1152 WP_084876957.1 N-acetylglucosamine-6-phosphate deacetylase -
  M9H69_RS01170 (M9H69_01170) - 210999..211364 (+) 366 WP_000286396.1 DUF1033 family protein -
  M9H69_RS01175 (M9H69_01175) comGA/cglA/cilD 211429..212370 (+) 942 WP_213988900.1 competence type IV pilus ATPase ComGA Machinery gene
  M9H69_RS01180 (M9H69_01180) comGB/cglB 212318..213334 (+) 1017 WP_213988901.1 competence type IV pilus assembly protein ComGB Machinery gene
  M9H69_RS01185 (M9H69_01185) comGC/cglC 213336..213659 (+) 324 WP_000735798.1 competence type IV pilus major pilin ComGC Machinery gene
  M9H69_RS01190 (M9H69_01190) comGD/cglD 213622..214056 (+) 435 WP_250315697.1 competence type IV pilus minor pilin ComGD Machinery gene
  M9H69_RS01195 (M9H69_01195) comGE/cglE 214019..214321 (+) 303 WP_167266658.1 competence type IV pilus minor pilin ComGE Machinery gene
  M9H69_RS01200 (M9H69_01200) comGF/cglF 214284..214745 (+) 462 WP_000250702.1 competence type IV pilus minor pilin ComGF Machinery gene
  M9H69_RS01205 (M9H69_01205) comGG/cglG 214723..215136 (+) 414 WP_195217483.1 competence type IV pilus minor pilin ComGG Machinery gene
  M9H69_RS01210 (M9H69_01210) - 215169..215759 (+) 591 WP_250315698.1 class I SAM-dependent methyltransferase -
  M9H69_RS01215 (M9H69_01215) comYH 215818..216765 (+) 948 WP_250315699.1 class I SAM-dependent methyltransferase Machinery gene
  M9H69_RS01220 (M9H69_01220) - 216823..218013 (+) 1191 WP_250315700.1 acetate kinase -
  M9H69_RS01225 (M9H69_01225) rnpA 218162..218533 (+) 372 WP_000748120.1 ribonuclease P protein component -

Sequence


Protein


Download         Length: 107 a.a.        Molecular weight: 11891.03 Da        Isoelectric Point: 10.1883

>NTDB_id=692899 M9H69_RS01185 WP_000735798.1 213336..213659(+) (comGC/cglC) [Streptococcus oralis strain HP01]
MKKLMTNLKKAKVKAFTLVEMLVVLLIISVLLLLFVPNLTKQKDAVDDKGKAAVVKVVESQAELYRLDKNDDASLSKLQA
DGRITAEQAKAYKDYHAKQKTSQTVAD

Nucleotide


Download         Length: 324 bp        

>NTDB_id=692899 M9H69_RS01185 WP_000735798.1 213336..213659(+) (comGC/cglC) [Streptococcus oralis strain HP01]
ATGAAAAAACTTATGACAAATTTAAAAAAAGCCAAGGTTAAAGCTTTCACTTTGGTAGAAATGTTAGTCGTCTTGCTCAT
CATCAGCGTTCTTCTCTTGCTCTTTGTACCCAATTTGACCAAGCAAAAGGATGCCGTAGATGATAAAGGAAAAGCTGCTG
TTGTCAAGGTTGTGGAAAGCCAGGCAGAACTTTATCGTTTGGATAAAAATGATGATGCCAGTCTCAGCAAATTACAAGCG
GACGGTCGTATCACAGCAGAGCAAGCCAAAGCTTATAAAGACTACCATGCAAAACAAAAAACAAGTCAAACTGTTGCAGA
TTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A1X1HB54

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC/cglC Streptococcus mitis NCTC 12261

91.589

100

0.916

  comGC/cglC Streptococcus mitis SK321

88.889

92.523

0.822

  comGC/cglC Streptococcus pneumoniae R6

86.869

92.523

0.804

  comGC/cglC Streptococcus pneumoniae Rx1

86.869

92.523

0.804

  comGC/cglC Streptococcus pneumoniae D39

86.869

92.523

0.804

  comGC/cglC Streptococcus pneumoniae TIGR4

85.859

92.523

0.794

  comYC Streptococcus gordonii str. Challis substr. CH1

67.619

98.131

0.664

  comYC Streptococcus mutans UA140

70.103

90.654

0.636

  comYC Streptococcus mutans UA159

70.103

90.654

0.636

  comGC Lactococcus lactis subsp. cremoris KW2

57.426

94.393

0.542

  comYC Streptococcus suis isolate S10

65.909

82.243

0.542