Detailed information
Bioinformatically predicted
Overview
| Name | comEA | Type | Machinery gene |
| Locus tag | PDPUS_RS11255 | Genome accession | NZ_AP018045 |
| Coordinates | 2325760..2326020 (-) | Length | 86 a.a. |
| NCBI ID | WP_371332594.1 | Uniprot ID | - |
| Organism | Photobacterium damselae subsp. piscicida strain 91-197 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| IS/Tn | 2325392..2325667 | 2325760..2326020 | flank | 93 |
Gene organization within MGE regions
Location: 2325392..2326020
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PDPUS_RS11255 (PDPUS_1_02405) | comEA | 2325760..2326020 (-) | 261 | WP_371332594.1 | ComEA family DNA-binding protein | Machinery gene |
Sequence
Protein
Download Length: 86 a.a. Molecular weight: 9471.94 Da Isoelectric Point: 5.1351
>NTDB_id=68806 PDPUS_RS11255 WP_371332594.1 2325760..2326020(-) (comEA) [Photobacterium damselae subsp. piscicida strain 91-197]
MALAMLLTPLAYAAKDKYEDIEIVVNINKANAEELDKLLVGVGPDKAENIIQYRKQNGKFATADDLAKVKGIGPSTVEKN
RDRIEL
MALAMLLTPLAYAAKDKYEDIEIVVNINKANAEELDKLLVGVGPDKAENIIQYRKQNGKFATADDLAKVKGIGPSTVEKN
RDRIEL
Nucleotide
Download Length: 261 bp
>NTDB_id=68806 PDPUS_RS11255 WP_371332594.1 2325760..2326020(-) (comEA) [Photobacterium damselae subsp. piscicida strain 91-197]
ATGGCATTAGCAATGCTACTTACCCCGTTAGCTTATGCAGCGAAAGATAAATACGAAGATATTGAAATTGTTGTCAATAT
TAATAAAGCAAATGCAGAAGAGTTGGATAAATTACTGGTTGGAGTTGGCCCAGATAAGGCTGAAAATATTATCCAATATC
GTAAGCAGAATGGTAAATTTGCGACCGCAGATGATCTTGCTAAGGTAAAAGGTATTGGTCCCTCTACCGTAGAAAAAAAC
CGCGATCGCATTGAACTGTAG
ATGGCATTAGCAATGCTACTTACCCCGTTAGCTTATGCAGCGAAAGATAAATACGAAGATATTGAAATTGTTGTCAATAT
TAATAAAGCAAATGCAGAAGAGTTGGATAAATTACTGGTTGGAGTTGGCCCAGATAAGGCTGAAAATATTATCCAATATC
GTAAGCAGAATGGTAAATTTGCGACCGCAGATGATCTTGCTAAGGTAAAAGGTATTGGTCCCTCTACCGTAGAAAAAAAC
CGCGATCGCATTGAACTGTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA | Vibrio campbellii strain DS40M4 |
52.326 |
100 |
0.523 |
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
52.941 |
98.837 |
0.523 |
| comEA | Acinetobacter baylyi ADP1 |
59.375 |
74.419 |
0.442 |
| comEA | Vibrio cholerae C6706 |
55.882 |
79.07 |
0.442 |
| comEA | Vibrio cholerae strain A1552 |
55.882 |
79.07 |
0.442 |
| comE1/comEA | Haemophilus influenzae Rd KW20 |
55 |
69.767 |
0.384 |
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
54.098 |
70.93 |
0.384 |
| comEA | Bacillus subtilis subsp. subtilis str. 168 |
50.794 |
73.256 |
0.372 |
| comE | Neisseria gonorrhoeae MS11 |
54.237 |
68.605 |
0.372 |
| comE | Neisseria gonorrhoeae MS11 |
54.237 |
68.605 |
0.372 |
| comE | Neisseria gonorrhoeae MS11 |
54.237 |
68.605 |
0.372 |
| comE | Neisseria gonorrhoeae MS11 |
54.237 |
68.605 |
0.372 |
| comA | Synechocystis sp. PCC 6803 |
42.105 |
88.372 |
0.372 |
| comEA | Lactococcus lactis subsp. cremoris KW2 |
50 |
72.093 |
0.36 |