Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilU   Type   Machinery gene
Locus tag   MUU73_RS11760 Genome accession   NZ_CP095184
Coordinates   2518193..2519329 (-) Length   378 a.a.
NCBI ID   WP_185895184.1    Uniprot ID   -
Organism   Pseudoxanthomonas mexicana strain F12     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2513193..2524329
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUU73_RS11720 (MUU73_11720) sugE 2513329..2513649 (+) 321 WP_245121122.1 quaternary ammonium compound efflux SMR transporter SugE -
  MUU73_RS11725 (MUU73_11725) coq7 2513761..2514402 (-) 642 WP_162110515.1 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinone monooxygenase -
  MUU73_RS11730 (MUU73_11730) rplM 2514590..2515018 (+) 429 WP_055936916.1 50S ribosomal protein L13 -
  MUU73_RS11735 (MUU73_11735) rpsI 2515021..2515413 (+) 393 WP_162110517.1 30S ribosomal protein S9 -
  MUU73_RS11745 (MUU73_11745) - 2515598..2516335 (+) 738 WP_245121124.1 2OG-Fe dioxygenase family protein -
  MUU73_RS11750 (MUU73_11750) - 2516398..2517387 (+) 990 WP_162110519.1 fumarylacetoacetate hydrolase family protein -
  MUU73_RS11755 (MUU73_11755) maiA 2517486..2518145 (+) 660 WP_245121126.1 maleylacetoacetate isomerase -
  MUU73_RS11760 (MUU73_11760) pilU 2518193..2519329 (-) 1137 WP_185895184.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  MUU73_RS11765 (MUU73_11765) - 2519425..2519820 (+) 396 WP_245121128.1 DUF4398 domain-containing protein -
  MUU73_RS11770 (MUU73_11770) - 2519817..2520704 (+) 888 WP_245121130.1 OmpA family protein -
  MUU73_RS11775 (MUU73_11775) - 2521061..2521279 (+) 219 WP_162110524.1 YdcH family protein -
  MUU73_RS11780 (MUU73_11780) - 2521395..2522765 (+) 1371 WP_245121132.1 pyridoxal-phosphate dependent enzyme -
  MUU73_RS11785 (MUU73_11785) - 2522865..2524052 (+) 1188 WP_245121134.1 cystathionine gamma-synthase -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 41809.17 Da        Isoelectric Point: 5.9760

>NTDB_id=675988 MUU73_RS11760 WP_185895184.1 2518193..2519329(-) (pilU) [Pseudoxanthomonas mexicana strain F12]
MDIGYFLKLMTEKNASDMFLTTGAPVYIKIEGKLYPLGNTGLPPGMVKKIAYSLMDEGQVPVFERELELNMAIALQDAGR
FRVNVFKQRGEVGMVIRAIRSVIPSIEELNLPPVLKDIIMTPRGLVLIVGSTGSGKSTSLASMIDYRNTTSTGHILTIED
PIEYLHRHKQSIVNQREVGLDTHAFHNALKNAMREAPDVILIGEILDATTMEAAIAFAETGHLCLATLHSNNADQTIERI
LNFFPESAHKNVLMNLALNLRAVVSQRLVKGVDGRRLPAAEVLINTPMIRDLLRRGQVHEIKAAMEESLEEGMESFDQCL
FRMVKEGLIEQEEALRAADSRDGLALKFRLSEGSKGEHDPYADYDTGSASPRITHGFG

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=675988 MUU73_RS11760 WP_185895184.1 2518193..2519329(-) (pilU) [Pseudoxanthomonas mexicana strain F12]
ATGGACATCGGCTATTTCCTGAAGCTGATGACCGAGAAGAACGCCTCGGACATGTTTCTGACCACCGGGGCGCCGGTCTA
CATCAAGATCGAGGGCAAGCTGTACCCCTTGGGCAATACCGGCCTGCCGCCCGGCATGGTCAAGAAGATCGCGTATTCGC
TGATGGATGAGGGCCAGGTGCCCGTGTTCGAGCGCGAGCTCGAGCTGAACATGGCCATCGCCCTGCAGGACGCCGGCCGC
TTCCGCGTCAACGTGTTCAAGCAGCGCGGCGAGGTGGGCATGGTCATCCGTGCCATCCGCAGCGTTATCCCCAGCATCGA
GGAGCTGAACCTGCCGCCGGTGTTGAAGGACATCATCATGACGCCGCGCGGCCTGGTGCTGATCGTGGGCTCCACCGGCT
CGGGCAAGTCGACGTCGCTGGCCTCGATGATCGACTACCGCAACACCACCAGCACCGGCCACATCCTCACCATCGAGGAT
CCGATCGAGTACCTGCACAGGCACAAGCAGTCCATCGTCAACCAGCGCGAGGTGGGTCTGGACACCCATGCCTTCCACAA
TGCGCTGAAGAACGCGATGCGCGAGGCGCCGGACGTCATCCTGATCGGCGAGATCCTGGACGCCACCACGATGGAGGCGG
CCATCGCCTTCGCCGAGACCGGCCATCTGTGCCTGGCGACGCTGCACTCCAACAACGCGGACCAGACCATCGAGCGCATC
CTCAACTTCTTCCCTGAGAGCGCGCACAAGAACGTGCTGATGAACCTGGCGCTGAACCTGCGCGCCGTGGTCTCGCAGCG
CTTGGTGAAAGGCGTCGACGGCCGCCGCCTGCCCGCCGCCGAGGTGCTGATCAACACGCCGATGATCCGCGACCTGCTGC
GCCGGGGGCAGGTGCACGAGATCAAGGCCGCCATGGAGGAATCGCTGGAGGAAGGCATGGAGTCCTTCGACCAGTGCCTG
TTCCGGATGGTGAAGGAAGGGCTGATCGAGCAGGAGGAGGCGCTGCGCGCGGCCGACTCGCGCGACGGTCTGGCCCTGAA
GTTCCGCCTGTCCGAGGGCAGCAAGGGCGAACACGACCCCTACGCCGACTACGACACCGGCAGCGCCTCGCCCCGCATCA
CCCACGGCTTCGGCTGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(12-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilU Pseudomonas stutzeri DSM 10701

51.811

94.974

0.492
  pilU Acinetobacter baylyi ADP1

49.153

93.651

0.46
  pilU Vibrio cholerae strain A1552

47.154

97.619

0.46
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

44.297

99.735

0.442
  pilT Pseudomonas aeruginosa PAK

42.012

89.418

0.376
  pilT Pseudomonas stutzeri DSM 10701

41.124

89.418

0.368
  pilT Acinetobacter baylyi ADP1

40.588

89.947

0.365
  pilT Acinetobacter baumannii D1279779

40.828

89.418

0.365
  pilT Acinetobacter nosocomialis M2

40.828

89.418

0.365
  pilT Acinetobacter baumannii strain A118

40.828

89.418

0.365
  pilT Legionella pneumophila strain Lp02

40.533

89.418

0.362
  pilT Legionella pneumophila strain ERS1305867

40.533

89.418

0.362