Detailed information NTG0066415

Bioinformatically predicted

Overview

• Name: pilQ
• Type: Machinery gene
• Locus tag: JCM16456_RS14035
• Genome accession: NZ_AP014635
• Coordinates: 3154295..3155605 (-)
• Length: 436 a.a.
• NCBI ID: WP_068715377.1
• Uniprot ID: -
• Organism: Vibrio tritonius strain AM2
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3149295..3160605

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JCM16456_RS14015	-	3150031..3150852 (-)	822	WP_068715371.1	Dam family site-specific DNA-(adenine-N6)-methyltransferase	-
JCM16456_RS14020	-	3150923..3152434 (-)	1512	WP_068715372.1	SPOR domain-containing protein	-
JCM16456_RS14025	aroB	3152484..3153563 (-)	1080	WP_068715375.1	3-dehydroquinate synthase	-
JCM16456_RS14030	aroK	3153590..3154108 (-)	519	WP_068716087.1	shikimate kinase AroK	-
JCM16456_RS14035	pilQ	3154295..3155605 (-)	1311	WP_068715377.1	type IV pilus secretin PilQ	Machinery gene
JCM16456_RS14040	-	3155602..3156060 (-)	459	WP_068715379.1	hypothetical protein	-
JCM16456_RS14045	-	3156063..3156626 (-)	564	WP_068715381.1	hypothetical protein	-
JCM16456_RS14050	-	3156626..3157171 (-)	546	WP_068715383.1	PilN domain-containing protein	-
JCM16456_RS14055	pilM	3157155..3158105 (-)	951	WP_068715385.1	pilus assembly protein PilM	-

Sequence

Protein

• Length: 436 a.a.
• Molecular weight: 47852.31 Da
• Isoelectric Point: 8.0382

>NTDB_id=66415 JCM16456_RS14035 WP_068715377.1 3154295..3155605(-) (pilQ) [Vibrio tritonius strain AM2]
MKQNLLLCLIVKSAVVILSFAWMSSFAFAADEKEKLISLQLQDAEVRRLLVLLAQQRHMNLVMSDSVAGNVSVNLDDVSW
NKALNIILKMKGLAYKEDSGVLWIAPRDELVNMEKEQRQIRLDKQPLSYLRVPIHYALAKNIADMVAKSGLLSPRGSVQI
DKRTNALLLKETAQGLKELQAFIQSLDVPMKQVLIEARIVTMSQGNLDELGVRWGIFQSNQTNLAGSLEGLQGADSEDIM
GQLNVHLPSASARASSIAFQVAKLGADTLLDLELSALQSESKAEIISSPRLVTTNKKPAYIEQGTEIPYLEAASSGATSV
TFRKAVLSLKVTPQITPDNRLILDLNVTQDRPGNAVSSGTGDAVTIQTQRIGTQVLVNNGETVVLGGIYQYSTIHHVDKV
PLLGDLPWIGSLFRRTYQQSGKNELLIFVTPKVFIQ

Nucleotide

• Length: 1311 bp

>NTDB_id=66415 JCM16456_RS14035 WP_068715377.1 3154295..3155605(-) (pilQ) [Vibrio tritonius strain AM2]
ATGAAACAGAACCTTTTATTGTGCTTAATAGTTAAGTCGGCTGTCGTCATTTTATCCTTTGCATGGATGAGTTCGTTTGC
TTTCGCTGCAGATGAAAAAGAGAAGCTTATTTCATTACAACTGCAAGATGCAGAAGTACGTCGATTGCTTGTATTACTGG
CTCAGCAACGTCACATGAACTTGGTGATGTCAGACAGTGTGGCTGGAAATGTGTCGGTGAACCTAGATGATGTTAGCTGG
AATAAGGCTCTGAACATTATCCTAAAAATGAAAGGTTTAGCTTACAAAGAAGATAGCGGAGTGTTATGGATAGCACCACG
CGATGAGCTGGTAAACATGGAGAAAGAGCAGCGGCAAATTCGCTTGGACAAACAGCCGTTAAGCTATTTACGCGTTCCAA
TTCATTATGCTCTTGCCAAGAATATCGCCGACATGGTGGCCAAAAGCGGGCTACTATCACCACGAGGTTCGGTGCAAATT
GATAAACGCACCAATGCATTACTGCTCAAAGAAACAGCGCAAGGATTAAAAGAGCTTCAAGCATTTATTCAGTCATTGGA
TGTACCAATGAAACAGGTCTTAATCGAAGCGCGTATTGTTACCATGAGCCAAGGTAATCTTGATGAACTTGGAGTTCGCT
GGGGGATTTTTCAAAGTAATCAAACGAACCTAGCAGGTTCATTAGAAGGATTGCAAGGTGCCGACTCTGAAGACATCATG
GGCCAACTTAATGTGCATCTTCCTTCTGCATCCGCTCGTGCAAGCAGTATTGCTTTTCAAGTGGCTAAGTTGGGGGCTGA
TACTTTGCTGGACCTTGAGTTATCCGCGTTACAAAGTGAATCAAAGGCTGAAATCATTTCGAGCCCTCGTTTGGTAACGA
CTAATAAGAAGCCTGCTTATATTGAGCAAGGTACAGAAATTCCCTATCTGGAAGCGGCATCTAGTGGAGCAACCTCGGTC
ACTTTTCGCAAAGCGGTTCTGAGTTTGAAAGTGACACCGCAAATCACGCCAGATAATCGTTTGATTCTTGATCTTAACGT
AACTCAAGACCGTCCGGGTAATGCGGTGAGTTCAGGTACGGGCGATGCTGTGACCATTCAAACACAAAGAATTGGTACTC
AAGTGTTAGTGAATAACGGTGAAACGGTCGTTTTGGGTGGTATTTATCAATACAGTACCATTCATCATGTGGACAAGGTT
CCTTTGTTGGGGGATCTACCTTGGATTGGTTCATTATTTCGGAGAACTTATCAACAAAGTGGCAAAAATGAGCTGCTAAT
ATTTGTGACGCCGAAAGTGTTCATTCAATGA

Domains

Predicted by InterproScan.

• Secretin and TonB N terminus short domain (STN) (60-106)

• Bacterial type II and III secretion system protein (Secretin) (276-433)

• Bacterial type II/III secretion system short domain (Secretin_N) (132-192)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilQ	Vibrio campbellii strain DS40M4	59.953	97.936	0.587
pilQ	Vibrio cholerae O1 biovar El Tor strain E7946	60.382	96.101	0.58
pilQ	Vibrio cholerae strain A1552	60.382	96.101	0.58
pilQ	Legionella pneumophila strain Lp02	42.892	95.183	0.408
pilQ	Legionella pneumophila strain ERS1305867	42.892	95.183	0.408
comQ	Acinetobacter baylyi ADP1	40.271	100	0.408
comE	Haemophilus influenzae Rd KW20	39.545	100	0.399
pilQ	Pseudomonas aeruginosa PAK	38.652	100	0.394
pilQ	Acinetobacter baumannii strain A118	37.281	100	0.39
pilQ	Acinetobacter baumannii D1279779	37.281	100	0.39
comE	Haemophilus influenzae 86-028NP	38.636	100	0.39
comE	Glaesserella parasuis strain SC1401	38.129	95.642	0.365
pilQ	Neisseria gonorrhoeae strain FA1090	37.56	95.872	0.36