Detailed information
Bioinformatically predicted
Overview
| Name | comP | Type | Machinery gene |
| Locus tag | AS19_RS14200 | Genome accession | NZ_AP014613 |
| Coordinates | 677044..677490 (+) | Length | 148 a.a. |
| NCBI ID | WP_046962267.1 | Uniprot ID | A0AAD1AZQ7 |
| Organism | Alcanivorax sp. NBRC 101098 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 672044..682490
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AS19_RS03170 (AS19_06290) | pilD | 672696..673571 (-) | 876 | WP_011587897.1 | A24 family peptidase | Machinery gene |
| AS19_RS03175 (AS19_06300) | pilC | 673574..674800 (-) | 1227 | WP_035460653.1 | type II secretion system F family protein | Machinery gene |
| AS19_RS03180 (AS19_06310) | pilB | 674803..676509 (-) | 1707 | WP_046961687.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| AS19_RS14200 (AS19_06320) | comP | 677044..677490 (+) | 447 | WP_046962267.1 | pilin | Machinery gene |
| AS19_RS03190 (AS19_06330) | - | 677506..678873 (+) | 1368 | WP_046961688.1 | O-antigen ligase | - |
| AS19_RS03195 (AS19_06340) | nadC | 678929..679771 (-) | 843 | WP_046961689.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| AS19_RS03200 (AS19_06350) | - | 679887..681224 (-) | 1338 | WP_011587903.1 | sodium:alanine symporter family protein | - |
Sequence
Protein
Download Length: 148 a.a. Molecular weight: 15174.16 Da Isoelectric Point: 4.1636
>NTDB_id=66224 AS19_RS14200 WP_046962267.1 677044..677490(+) (comP) [Alcanivorax sp. NBRC 101098]
MKKQMQQGFTLIELMIVVAIIGILAAVALPAYQDYTTRAKMSEVIGFAASAKTAVTECIQNDNATAGCNSNSAVGMDQAE
NITSTYVESVTVGADGQVVVAIQGTNDDTLDAASISLTPSLSSGGGVSWSCAPSATSINKFLPASCRS
MKKQMQQGFTLIELMIVVAIIGILAAVALPAYQDYTTRAKMSEVIGFAASAKTAVTECIQNDNATAGCNSNSAVGMDQAE
NITSTYVESVTVGADGQVVVAIQGTNDDTLDAASISLTPSLSSGGGVSWSCAPSATSINKFLPASCRS
Nucleotide
Download Length: 447 bp
>NTDB_id=66224 AS19_RS14200 WP_046962267.1 677044..677490(+) (comP) [Alcanivorax sp. NBRC 101098]
ATGAAGAAGCAAATGCAACAGGGTTTCACCCTTATTGAGCTGATGATTGTAGTTGCTATCATCGGCATCTTGGCTGCCGT
GGCTTTGCCTGCTTACCAGGATTATACAACTCGTGCAAAAATGTCAGAAGTTATTGGTTTTGCTGCATCCGCTAAAACTG
CGGTGACTGAATGTATCCAGAATGATAATGCGACGGCAGGTTGCAACTCTAATAGCGCAGTTGGAATGGATCAGGCCGAA
AACATTACCAGTACGTATGTAGAGTCTGTCACTGTTGGTGCTGATGGACAGGTGGTGGTTGCAATCCAAGGAACCAATGA
TGACACTCTTGATGCGGCATCTATTAGCTTGACTCCAAGCCTGAGTTCTGGTGGTGGTGTTAGCTGGAGCTGCGCACCTT
CTGCTACAAGTATTAACAAGTTCTTGCCAGCTAGCTGCCGCTCTTAA
ATGAAGAAGCAAATGCAACAGGGTTTCACCCTTATTGAGCTGATGATTGTAGTTGCTATCATCGGCATCTTGGCTGCCGT
GGCTTTGCCTGCTTACCAGGATTATACAACTCGTGCAAAAATGTCAGAAGTTATTGGTTTTGCTGCATCCGCTAAAACTG
CGGTGACTGAATGTATCCAGAATGATAATGCGACGGCAGGTTGCAACTCTAATAGCGCAGTTGGAATGGATCAGGCCGAA
AACATTACCAGTACGTATGTAGAGTCTGTCACTGTTGGTGCTGATGGACAGGTGGTGGTTGCAATCCAAGGAACCAATGA
TGACACTCTTGATGCGGCATCTATTAGCTTGACTCCAAGCCTGAGTTCTGGTGGTGGTGTTAGCTGGAGCTGCGCACCTT
CTGCTACAAGTATTAACAAGTTCTTGCCAGCTAGCTGCCGCTCTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comP | Acinetobacter baylyi ADP1 |
47.712 |
100 |
0.493 |
| pilA/pilA1 | Eikenella corrodens VA1 |
41.212 |
100 |
0.459 |
| pilE | Neisseria gonorrhoeae strain FA1090 |
41.875 |
100 |
0.453 |
| pilE | Neisseria elongata subsp. glycolytica ATCC 29315 |
41.139 |
100 |
0.439 |
| pilA | Ralstonia pseudosolanacearum GMI1000 |
38.554 |
100 |
0.432 |
| pilE | Neisseria gonorrhoeae MS11 |
39.375 |
100 |
0.426 |
| pilA2 | Legionella pneumophila str. Paris |
43.662 |
95.946 |
0.419 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
43.662 |
95.946 |
0.419 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
39.726 |
98.649 |
0.392 |
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
39.568 |
93.919 |
0.372 |
| pilA | Haemophilus influenzae 86-028NP |
36.242 |
100 |
0.365 |