Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYC   Type   Machinery gene
Locus tag   SRT_RS01085 Genome accession   NZ_AP014612
Coordinates   213125..213439 (+) Length   104 a.a.
NCBI ID   WP_128832750.1    Uniprot ID   -
Organism   Streptococcus troglodytae strain TKU 31     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 208125..218439
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SRT_RS01070 (SRT_01910) - 210708..211091 (+) 384 WP_128832748.1 DUF1033 family protein -
  SRT_RS01075 comGA 211219..212158 (+) 940 Protein_179 competence type IV pilus ATPase ComGA -
  SRT_RS01080 (SRT_01940) comYB 212094..213125 (+) 1032 WP_256376016.1 competence type IV pilus assembly protein ComGB Machinery gene
  SRT_RS01085 (SRT_01950) comYC 213125..213439 (+) 315 WP_128832750.1 competence type IV pilus major pilin ComGC Machinery gene
  SRT_RS01090 (SRT_01960) comYD 213426..213830 (+) 405 WP_161940061.1 competence type IV pilus minor pilin ComGD Machinery gene
  SRT_RS01095 (SRT_01970) comYE 213802..214095 (+) 294 WP_128832752.1 competence type IV pilus minor pilin ComGE Machinery gene
  SRT_RS01100 (SRT_01980) comYF 214082..214516 (+) 435 WP_128832753.1 competence type IV pilus minor pilin ComGF Machinery gene
  SRT_RS01105 (SRT_01990) comYG 214494..214883 (+) 390 WP_128832754.1 competence type IV pilus minor pilin ComGG Machinery gene
  SRT_RS01110 (SRT_02010) - 214938..215890 (+) 953 Protein_186 class I SAM-dependent methyltransferase -
  SRT_RS01115 (SRT_02020) - 215949..217148 (+) 1200 WP_128832755.1 acetate kinase -
  SRT_RS01120 (SRT_02040) - 217692..217892 (+) 201 WP_128834002.1 helix-turn-helix transcriptional regulator -
  SRT_RS01125 (SRT_02050) - 217906..218345 (+) 440 Protein_189 hypothetical protein -

Sequence

Protein


Download         Length: 104 a.a.        Molecular weight: 11607.66 Da        Isoelectric Point: 10.0772

>NTDB_id=66153 SRT_RS01085 WP_128832750.1 213125..213439(+) (comYC) [Streptococcus troglodytae strain TKU 31]
MKKIKRVCVRAFTLIEMLVVLLIISILLLLFVPNLTKQKDKVKDTGGSAVVKVVESQAELYELNKTDSATLSKLVASGDI
TQEQANSYKDYYAKHPSKTRHVAN

Nucleotide


Download         Length: 315 bp        

>NTDB_id=66153 SRT_RS01085 WP_128832750.1 213125..213439(+) (comYC) [Streptococcus troglodytae strain TKU 31]
ATGAAAAAGATCAAGAGAGTCTGTGTACGAGCTTTTACGCTTATTGAAATGTTAGTAGTCCTTCTCATTATTAGTATTCT
TTTACTATTGTTTGTTCCTAATTTAACTAAGCAAAAAGATAAGGTCAAAGATACTGGCGGTTCTGCCGTGGTTAAAGTTG
TAGAAAGTCAGGCTGAGCTTTATGAACTTAATAAAACCGATTCTGCTACTCTTTCTAAATTAGTAGCTAGTGGTGATATT
ACACAAGAACAGGCAAATTCATACAAGGATTACTATGCAAAACACCCAAGTAAAACACGGCATGTCGCGAATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(10-30)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYC Streptococcus mutans UA140

99.038

100

0.99
  comYC Streptococcus mutans UA159

99.038

100

0.99
  comYC Streptococcus gordonii str. Challis substr. CH1

71.429

100

0.721
  comGC/cglC Streptococcus mitis SK321

66.667

95.192

0.635
  comGC/cglC Streptococcus mitis NCTC 12261

69.565

88.462

0.615
  comGC/cglC Streptococcus pneumoniae R6

63.636

95.192

0.606
  comGC/cglC Streptococcus pneumoniae Rx1

63.636

95.192

0.606
  comGC/cglC Streptococcus pneumoniae D39

63.636

95.192

0.606
  comGC/cglC Streptococcus pneumoniae TIGR4

63.636

95.192

0.606
  comGC Lactococcus lactis subsp. cremoris KW2

59.14

89.423

0.529
  comYC Streptococcus suis isolate S10

60.227

84.615

0.51

Multiple sequence alignment