Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYD   Type   Machinery gene
Locus tag   SRT_RS01090 Genome accession   NZ_AP014612
Coordinates   213426..213830 (+) Length   134 a.a.
NCBI ID   WP_161940061.1    Uniprot ID   -
Organism   Streptococcus troglodytae strain TKU 31     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 208426..218830
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SRT_RS01070 (SRT_01910) - 210708..211091 (+) 384 WP_128832748.1 DUF1033 family protein -
  SRT_RS01075 comGA 211219..212158 (+) 940 Protein_179 competence type IV pilus ATPase ComGA -
  SRT_RS01080 (SRT_01940) comYB 212094..213125 (+) 1032 WP_256376016.1 competence type IV pilus assembly protein ComGB Machinery gene
  SRT_RS01085 (SRT_01950) comYC 213125..213439 (+) 315 WP_128832750.1 competence type IV pilus major pilin ComGC Machinery gene
  SRT_RS01090 (SRT_01960) comYD 213426..213830 (+) 405 WP_161940061.1 competence type IV pilus minor pilin ComGD Machinery gene
  SRT_RS01095 (SRT_01970) comYE 213802..214095 (+) 294 WP_128832752.1 competence type IV pilus minor pilin ComGE Machinery gene
  SRT_RS01100 (SRT_01980) comYF 214082..214516 (+) 435 WP_128832753.1 competence type IV pilus minor pilin ComGF Machinery gene
  SRT_RS01105 (SRT_01990) comYG 214494..214883 (+) 390 WP_128832754.1 competence type IV pilus minor pilin ComGG Machinery gene
  SRT_RS01110 (SRT_02010) - 214938..215890 (+) 953 Protein_186 class I SAM-dependent methyltransferase -
  SRT_RS01115 (SRT_02020) - 215949..217148 (+) 1200 WP_128832755.1 acetate kinase -
  SRT_RS01120 (SRT_02040) - 217692..217892 (+) 201 WP_128834002.1 helix-turn-helix transcriptional regulator -
  SRT_RS01125 (SRT_02050) - 217906..218345 (+) 440 Protein_189 hypothetical protein -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15483.81 Da        Isoelectric Point: 9.5760

>NTDB_id=66154 SRT_RS01090 WP_161940061.1 213426..213830(+) (comYD) [Streptococcus troglodytae strain TKU 31]
MSRIKAFTLIESLVTLAITSFLILSFSGGIIQTFAKVEERLFFLSFEHLYRDTQKLSVYQRQDMTLILKSEYISNGVERL
KIPKNVKLERNETLHFDQAGGNSSLEKLVFQTSDEKRVTYQLYIGSGQYKKTES

Nucleotide


Download         Length: 405 bp        

>NTDB_id=66154 SRT_RS01090 WP_161940061.1 213426..213830(+) (comYD) [Streptococcus troglodytae strain TKU 31]
ATGTCGCGAATTAAAGCTTTTACGCTTATAGAAAGTTTAGTGACTTTGGCAATTACTAGTTTTTTGATTTTAAGCTTTTC
AGGTGGTATAATTCAAACGTTTGCCAAAGTAGAAGAGCGTCTCTTTTTTCTTTCTTTTGAACATCTTTACCGTGACACGC
AAAAACTTAGTGTTTATCAAAGACAAGATATGACTTTAATATTAAAAAGCGAATATATCTCAAATGGTGTTGAAAGACTT
AAAATCCCTAAGAATGTTAAACTAGAGAGGAATGAAACTTTGCACTTTGATCAGGCAGGAGGAAATTCTTCTTTAGAAAA
ACTTGTTTTTCAAACATCTGATGAAAAAAGAGTTACTTATCAATTATATATAGGAAGTGGTCAGTATAAAAAAACAGAAA
GTTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYD Streptococcus mutans UA140

96.269

100

0.963
  comYD Streptococcus mutans UA159

96.269

100

0.963
  comYD Streptococcus gordonii str. Challis substr. CH1

50.388

96.269

0.485
  comGD/cglD Streptococcus mitis NCTC 12261

48.837

96.269

0.47
  comGD/cglD Streptococcus pneumoniae Rx1

48.438

95.522

0.463
  comGD/cglD Streptococcus pneumoniae D39

48.438

95.522

0.463
  comGD/cglD Streptococcus pneumoniae R6

48.438

95.522

0.463
  comGD/cglD Streptococcus pneumoniae TIGR4

47.656

95.522

0.455
  comGD/cglD Streptococcus mitis SK321

47.656

95.522

0.455
  comGD Lactococcus lactis subsp. cremoris KW2

38.636

98.507

0.381

Multiple sequence alignment